Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00887 ATGAGAgtttcatcacaaaattcagaAACCGAGAGTACCTCAAATTCATCACCACCAACATCACCATGTACAACTAACTCAATTCAAGACCAAGAATCCAACATAAACAACAAGAATCTTAAACGCAACCGTGACTCGAATAGACACCCCGTCTACCGAGGTGTTCGCATGAGAAATTGGGGAAAGTGGGTGTCCGAAATCCGAGAGCCTCGTAAAAAATCACGGATTTGGCTCGGCACTTTCCCCACAGCTGAAATGGCTGCCAGAGCGCACGACGCAGCCGCGCTCTGTGTTAAAGGAAAAACAGCCATTCTCAATTTTCCTCACCTGGCATCCTCGCTTCCAAAACCTGCTTCTTTAGCCCCTCGCGATGTTCAAGCCGCGGCAGCTAAAGCAGCTCAAATGGACAACAAATTAGAATCACcgtcatcttcttcttcatttacATCGTTGTCATCAATGACATCATCGATAACAACAATCTCTTCATCGACAAGTCTGTTAATGAAAACAGCAACAACGTTGTCTTCATCAGCAGACTTGTCAACTACTTCCGACGAACTTAGCGAGATTATTGAGCTACCTACTTTGGAAAATGTTTATGATGATGTTGGAAAAGATGAGTTTTTGTTTGTTGACTCACAATCACAAGACTATGCTTGGATGTATCAACAACCAATGACATGGTTACATACAACACAAGAAGATGCAGGTTGTTGTGGTGATGATGGTGTTGTAACTAGTTTCGAGAGTTTTCTATGGAATTACTAG 771 0.4086 MRVSSQNSETESTSNSSPPTSPCTTNSIQDQESNINNKNLKRNRDSNRHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDAAALCVKGKTAILNFPHLASSLPKPASLAPRDVQAAAAKAAQMDNKLESPSSSSSFTSLSSMTSSITTISSSTSLLMKTATTLSSSADLSTTSDELSEIIELPTLENVYDDVGKDEFLFVDSQSQDYAWMYQQPMTWLHTTQEDAGCCGDDGVVTSFESFLWNY 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00887 256 Gene3D AP2/ERF domain 51 109 IPR036955 GO:0003700|GO:0006355
Tsu01g00887 256 MobiDBLite consensus disorder prediction 1 36 - -
Tsu01g00887 256 SUPERFAMILY DNA-binding domain 51 109 IPR016177 GO:0003677
Tsu01g00887 256 CDD AP2 52 110 IPR001471 GO:0003700|GO:0006355
Tsu01g00887 256 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 5 236 - -
Tsu01g00887 256 Pfam AP2 domain 50 100 IPR001471 GO:0003700|GO:0006355
Tsu01g00887 256 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Tsu01g00887 256 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 236 - -
Tsu01g00887 256 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Tsu01g00887 256 MobiDBLite consensus disorder prediction 1 50 - -
Tsu01g00887 256 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Tsu01g00887 256 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00887 Tsu-Chr1 8118099 8118993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00887 25 238 AP2-EREBP Transcription Factor Family AT5G11590 52.727 5.24e-61 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu01g00887 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00887 K09286 - gmx:100305349 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g00450 07 3461983 3462915 Tsu01g00887 01 8118099 8118993 PCT