Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00883 ATGGAAGGAACAACCAACATTTTCCAAACCACATTTTGCCCACAACTCCCTTCCTCCTCCTCTGACAACGGCGTCAAGACCAATAATGCGATCGTCGAACAATTCATTGTTGAGGACCTTCTTAATCTCAACAATGACGTTGATGATGCTACCATCATTTCTGACACCAATCTTGACTCTGCCACCGGCAACTCAACGGACTCCTCCTCTACCGTGACGGTTGTCAATAGCGTTAGCTCGTCATCATTGTCCGGGTGCGACCCCAATCTCGTTCCTGATATTGGCTGCCATTTCTCCGGAGACCTGTGTGTTCcgGATGATGATTTAGCGGAGCTGGAATGGCTTTCGAATATTGTGGAGGAATCATTTTCAAACGAGGATCTTCAAAAGATGCAACTGATATCAGGCATGAAGGTGCAAAGCAAAGACGAAGGCCCCCATGAGTTTTCTCAACTCAACCGAAACAATCCAATATTTAACAAAGAAGTTTCGGTTCCAGCTAAGGCCCGTAGCAAGAGGACTCGTGGACCCCCTTGCGACTGGAGTTCACGTCTTCTTGTACTGTCTCAAACGACCCCATCTTCATCTGAGTCAGAGGAACAACTCCTTATTCCTACTCCGACCTTACCCTCCGTCACTATTCCAAAGAAGCAACCAAAGACAGCTCCAAGAAGAAAGGACAATAATGACGGAGGGTCAGGTGGAGATGGCCGTAGGTGCTTGCATTGCATGACGGACAAGACACCGCAATGGAGAACCGGGCCTAAGGGCCCAAAGACATTATGCAATGCATGTGGTGTAAGATATAAGTCAGGTCGATTAGTGCCTGAATACAGGCCTGCAGCAAGCCCGACATTTGTGTTGACCAAACACTCCAACTCGCACCGTAAAGTGTTAGAGCTACGGAGGCAGAAGGAAATGTTGCAGGCTCACCAACATCATCAACAGAACCAATTCTTACACCATCAGAATATGATGTTTGATATGTCAAATGGTGAAGATTACTTGATTCATCAACATGTTGGACCTGATTTTAGACAGATGATGCAGTAG 1053 0.4653 MEGTTNIFQTTFCPQLPSSSSDNGVKTNNAIVEQFIVEDLLNLNNDVDDATIISDTNLDSATGNSTDSSSTVTVVNSVSSSSLSGCDPNLVPDIGCHFSGDLCVPDDDLAELEWLSNIVEESFSNEDLQKMQLISGMKVQSKDEGPHEFSQLNRNNPIFNKEVSVPAKARSKRTRGPPCDWSSRLLVLSQTTPSSSESEEQLLIPTPTLPSVTIPKKQPKTAPRRKDNNDGGSGGDGRRCLHCMTDKTPQWRTGPKGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMLQAHQHHQQNQFLHHQNMMFDMSNGEDYLIHQHVGPDFRQMMQ 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00883 350 SMART GATA_3 234 284 IPR000679 GO:0006355|GO:0043565
Tsu01g00883 350 ProSiteProfiles GATA-type zinc finger domain profile. 234 270 IPR000679 GO:0006355|GO:0043565
Tsu01g00883 350 MobiDBLite consensus disorder prediction 190 241 - -
Tsu01g00883 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 235 298 - -
Tsu01g00883 350 MobiDBLite consensus disorder prediction 190 215 - -
Tsu01g00883 350 Pfam GATA zinc finger 240 273 IPR000679 GO:0006355|GO:0043565
Tsu01g00883 350 PIRSF Txn_fac_GATA_plant 15 330 IPR016679 GO:0003677|GO:0005634|GO:0045893
Tsu01g00883 350 Gene3D - 233 316 IPR013088 GO:0006355|GO:0008270
Tsu01g00883 350 CDD ZnF_GATA 239 286 IPR000679 GO:0006355|GO:0043565
Tsu01g00883 350 PANTHER GATA TRANSCRIPTION FACTOR 1 349 - -
Tsu01g00883 350 PANTHER GATA TRANSCRIPTION FACTOR 1 349 - -
Tsu01g00883 350 ProSitePatterns GATA-type zinc finger domain. 240 265 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00883 Tsu-Chr1 8057240 8058891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00883 95 349 C2C2-Gata Transcription Factor Family AT5G25830 59.041 5.49e-94 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu01g00883 GATA 3.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00883 - - cam:101502134 484.952