Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00881 ATGCCTCCTCAACTTCGAACCAGAACACCAAGAATCAACCCGAACCAAAACCCGAATCAAAATCCGATCACTAAACCCGCTCCAAGAGGTAGAAGAGGTAGACCTGCAAAAAACCGTAACGCCATCGCTGTTCAAGAAAACGAACAACCTCACGCGCCTCTTGTTAGGGTTTCAAGAGATATTATTAAGCAAGATATTATGGATGATGACTGTCATAGCGGTGCCAAGACTCCCGATGATAAAGCTCCGCTGGCTGATGATGAAGGAACTACACCTCCTATTCCtgaaaaaGTTCAAGTAGGTGGTTCGCCGTTGTATAGAGTAGATAGAAAGCTAGGGAAAGGAGGATTTGGACAGGTTTATGTTGGTCGCCGTGTCGGTGCTGGACCAGGAGCTGTTGAGGTGGCTTTGAAGTTTGAGCATAAAACTAGTAAGGGGTGTAATTATGGACCTCCTTACGAGTGGCAGGTTTACAAtGTATTAGGTGGTAGTCATGGTGTTCCCCGAGTTCATTACAAGGGAAAGCAAGGTGATTTCTATGTTATGGTCATGGATATTCTTGGCCCTAGTTTATGGGATGTTTGGAATAACAAGACACACACGATGTCTGCTGAAATGGTGGCATGTATAGCAATCGAGGCTGTCTCCATATTAGAGAAGATGCATTCTAGAGGATACGTGCATGGCGATGTAAAACCTGAGAACTTTTTGCTTGGCCCTCCAGGAACTCATGAAGAGAAAAAGCTTTTTTTGGTTGATCTTGGATTAGCAACCCGTTGGCGTGATAATTCAACTGGTCTTCATGTTGATTACGATCAACGTCCAGATGTATTTAGGGGAACAGTTCGTTATGCAAGTGTCCACGCTCATCTTGGTAGGACAGGTAGCAGAAGAGATGATTTGGAATCTCTTGCATACACGCTAATCTTCCTTCTTCGTGGACGGCTACCTTGGCAAGGATACCAGGGCGAAAATAAAGGATTTCTCGTCTGCAAGAAAAAGATGGCCACCTCACCAGAGAATATGTGTATTCTTTGTCCCGCACCTTTTCGGCAGTTTATCGAGTACGTAGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAATATATATCACTTTTCGATGGAATTGTTGGTCCAAATCCAGAGATTAGACCCATAAACACTGATGGTGCACAGAAGCTTATATATCAGGTTGGACAGAAGAGAGGACGATTGAccatggaagaagatgatgatgagcaGCCAAAGAAAAAAGTCAGAATGGGAATGCCAGCAACACAATGGATAAGTGTGTACAATGCACGGCGACCTATGAAGCAAAGGTACCATTACAATGTTACTGATATTCGGTTGTCCCAACACATTGAGAAGGGATATGAAGATGGGTTATTTATCAGCAGTGTAGCTTGTTGTTCTAACCTTTGGGCACTGATTATGGATGCCGGCACTGGTTTCACTGCACAAGTTTATGAACTCTCATCCCACTTCCTTCACAAGGAATGGATTATGGAGCAATGGGAAAAAAGTTATTACATTAGTGCCATAGCAGGAGCTAATAACGGGAGCTCTTTGGTTGTAATGTCGAAAGGGACCCAATATTTGCAGCAATCCTACAAGGTCAGTGAATCATTTCCATTCAAGTggattaataaaaaatggaaagaagGATTTTTTGTCACTGCTATGGCCACTTCTGGAAGTAGATGGGCAATTGTCATGTCCCGTGGTGCTGGATTTTCAGATCAGGTTGTGGAGCTTGATTTCCTGTATCCTAGTGAAGGTATTCATCGAAGGTGGGACAGTGGTTACCGCATCACTTCAACTGCTGCTACATTTGACCAGGCTGCTCTTGTTCTTAGtattccaagaaagaaaccaactGATGAAACTCAAGAAACACTCCGCACATCTGACTTTCCTAGTACTCATGTCAAGGAAAAATGGTCAAAGAACCTCTATATTGCATCTATTTGTTATGGAAGAACAGTTTCATGA 2001 0.4163 MPPQLRTRTPRINPNQNPNQNPITKPAPRGRRGRPAKNRNAIAVQENEQPHAPLVRVSRDIIKQDIMDDDCHSGAKTPDDKAPLADDEGTTPPIPEKVQVGGSPLYRVDRKLGKGGFGQVYVGRRVGAGPGAVEVALKFEHKTSKGCNYGPPYEWQVYNVLGGSHGVPRVHYKGKQGDFYVMVMDILGPSLWDVWNNKTHTMSAEMVACIAIEAVSILEKMHSRGYVHGDVKPENFLLGPPGTHEEKKLFLVDLGLATRWRDNSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGFLVCKKKMATSPENMCILCPAPFRQFIEYVVNLKFDEEPNYAKYISLFDGIVGPNPEIRPINTDGAQKLIYQVGQKRGRLTMEEDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVTDIRLSQHIEKGYEDGLFISSVACCSNLWALIMDAGTGFTAQVYELSSHFLHKEWIMEQWEKSYYISAIAGANNGSSLVVMSKGTQYLQQSYKVSESFPFKWINKKWKEGFFVTAMATSGSRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDSGYRITSTAATFDQAALVLSIPRKKPTDETQETLRTSDFPSTHVKEKWSKNLYIASICYGRTVS 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00881 666 ProSiteProfiles Protein kinase domain profile. 106 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00881 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Tsu01g00881 666 MobiDBLite consensus disorder prediction 8 24 - -
Tsu01g00881 666 SMART serkin_6 106 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00881 666 MobiDBLite consensus disorder prediction 69 101 - -
Tsu01g00881 666 CDD STKc_CK1 106 375 - -
Tsu01g00881 666 Gene3D Transferase(Phosphotransferase) domain 1 88 424 - -
Tsu01g00881 666 MobiDBLite consensus disorder prediction 69 86 - -
Tsu01g00881 666 ProSitePatterns Protein kinases ATP-binding region signature. 112 138 IPR017441 GO:0005524
Tsu01g00881 666 PANTHER CASEIN KINASE-RELATED 63 640 - -
Tsu01g00881 666 PANTHER - 63 640 - -
Tsu01g00881 666 SUPERFAMILY Protein kinase-like (PK-like) 106 381 IPR011009 -
Tsu01g00881 666 Pfam Protein kinase domain 106 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00881 666 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00881 Tsu-Chr1 8026876 8032183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00881 105 261 EF-hand Containing Proteins AT2G17290 30.675 1.54e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Tsu01g00881 Pkinase 1.1e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00881 - - rcu:8275677 1108.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00881 01 8026876 8032183 Tsu01g00881 01 8026876 8032183 ECH
Tsu07g00785 07 6449647 6454374 Tsu01g00881 01 8026876 8032183 ECH