Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00858 ATGGCTATGGCTAGGTTCATTGAAGAAGAAGTTCAATTTTTTGATGCACAAGAGGATATTGTGTTAATGTCAGATGTAAATGGTATTATTGACAACCCTCAAGTTGATTCTGGTTTTCCTATGGATTTGTTGAAAGATTTTGGATATGAATTGTGGACTCGGAGTCCGGGTAGTGTTCGAGATCGAAGGAGTAAGTTTGTAAAGTGGATGGAGTCGagtttggataaaaaaaacGTTGAGAATTCAGGAGATGGAAGTAATCATGAAAAGGAAGATGAGATGAACAGAATGAAAGATGGTGTTGAGAGTGCGAACAAAAGTTCTGGTTTTATGGATGATTTCTTTTCGAGTAAGTCATCAATGTCTTGTTCGTCTTCCATGGAATCTTGCGAGTTTGTTGGTTTGGTAGAGGAATCAGCATGCCAAGATAGGAATTTGGATAGTGTAGTAGGGTCTAGTGAGGGTCAGGTAGCGCAGCATAGGGAGAATAATGATCGGTTGGTGGTTTCAGATGAATCCGAGAAAGCAGCCGAGATGTCTCCAACTTACCAACGCGAGATTGGTAAGGAGTCCGAGGAGACAGGTGTGTTTGAGGGTTGGAAGAGGAGGGCAAAAAAGGCTTggttaagaaaattaaattcagTGAAATCCAAGATGGATGGATTCCAAGGAGAATCTGATAGCAAGAAGCACGAAGGCGGTGTTCCATTATCGGGCTGTAGGATTCAGAGAGTTAAGGTCCGTCAATGCAAGAAACAAAGAAAGGAACTTTCGGCTCTTTATATAGGACAAGATATTCAAGCGCACGAAGGACCAATTTTAACAATGAAATTTAGTCCTGATGGACAGTATCTTGCTAGTGCTGGCGAAGATGGAATTGTGCGATTGTGGCAAGTGGTTGAGGATGAGAGACATAATGAAATTGACATTCCAGAAGTTGATACATCCTGCATTTACTTTACGGTGAATAATCTGTCCGAATTGACACCCTTGTTTACGGATAAGGATAAAATCAGAAATGTGAAGAGTCTAAAAAAGACATCAGATTCAGCGTGCGTCATTTTTCCTCCTAAGGTCTTTCGGTTATTGGAGAAACCACTGCATGAGTTCCATGGTCATAGAGGCGAAATTTTGGATCTCTCTTGGTCAAATAATAATTATCTGCTGTCGTCTTCAGTTGATAAAACTGTTCGCCTATGGCAAGTGGGACATGATTGCTGCTTGAAAGTTTTCTCACACAGTAATTATGTGACATGCATACAGTTCAATCCGGTGGATAATAATTATTTCATTAGCGGATCAATAGATGGAAAAGTGCGTATATGGGCGATTCCTGACTGTCAAGTTGTTGATTGGACTGACGTCAAGGAAATCGTCACTGCAGTGTGTTATCGACCCGATGGACAGGGAGGGATTATTGGCTCCTTGACAGGCAATTGTTGGTTTTACAATGTATCAGATAATCATCACCTACAGATGCAATCACAACTATCCTTACTTGGTAAAAAGAAATCTCCAGGGAGAGGAATAACCGGATTTCAGTTTCTTCCTcaagattttaataaagttatGGTTACCTGTGCTGATTCACAAGTCAGAATCATTGAAGGGCTTAATGTCGTTGGCAAATTCAAAGGCCTTAATACAGGGAGCCTAATGTCCGCATCGCTTACTTCGGACGGAAAACACATTTTATCAGCCTGTGAAGACTCCAATGTATATATGTGGAATGTTGGTGACGACGAGTTTCACACCACGAAAGTCAAGAAGATTAAGTCCTGCGAGCATTTTTATTCAAATGCATCTGTGGCGGTACCTTGGTGTGGTTTGAAATCTGGGAACATTGATAACTTGAAACAATTGGATGCCCTAAATAAGAGGCCACCTCAAGCTGTATGCCTCGAGCCACCGTCTTCTTTTTCTCTAAGCCAAGATTTTTTCTTGGATTCTATTCCGAAAGGTTCCGCAACTTATCCCGAGGAGAAACTTCCTACTTCAAGTCCTAAGAGTAAAAATTCTGCAATGCACAAATCTGCATACAAGTTCTTGAAATCTTCATGCAAGAGCACTTCCAATTGTCATGCATGGGGTCTAGTCATCGTGACTGCCGGTTGGGACGGTCGAATAAAATCATTCCACAATTACGGATTACCTGTACTCGTTTGA 2166 0.4054 MAMARFIEEEVQFFDAQEDIVLMSDVNGIIDNPQVDSGFPMDLLKDFGYELWTRSPGSVRDRRSKFVKWMESSLDKKNVENSGDGSNHEKEDEMNRMKDGVESANKSSGFMDDFFSSKSSMSCSSSMESCEFVGLVEESACQDRNLDSVVGSSEGQVAQHRENNDRLVVSDESEKAAEMSPTYQREIGKESEETGVFEGWKRRAKKAWLRKLNSVKSKMDGFQGESDSKKHEGGVPLSGCRIQRVKVRQCKKQRKELSALYIGQDIQAHEGPILTMKFSPDGQYLASAGEDGIVRLWQVVEDERHNEIDIPEVDTSCIYFTVNNLSELTPLFTDKDKIRNVKSLKKTSDSACVIFPPKVFRLLEKPLHEFHGHRGEILDLSWSNNNYLLSSSVDKTVRLWQVGHDCCLKVFSHSNYVTCIQFNPVDNNYFISGSIDGKVRIWAIPDCQVVDWTDVKEIVTAVCYRPDGQGGIIGSLTGNCWFYNVSDNHHLQMQSQLSLLGKKKSPGRGITGFQFLPQDFNKVMVTCADSQVRIIEGLNVVGKFKGLNTGSLMSASLTSDGKHILSACEDSNVYMWNVGDDEFHTTKVKKIKSCEHFYSNASVAVPWCGLKSGNIDNLKQLDALNKRPPQAVCLEPPSSFSLSQDFFLDSIPKGSATYPEEKLPTSSPKSKNSAMHKSAYKFLKSSCKSTSNCHAWGLVIVTAGWDGRIKSFHNYGLPVLV 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00858 721 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 307 IPR001680 GO:0005515
Tsu01g00858 721 PRINTS G protein beta WD-40 repeat signature 285 299 IPR020472 -
Tsu01g00858 721 PRINTS G protein beta WD-40 repeat signature 388 402 IPR020472 -
Tsu01g00858 721 PRINTS G protein beta WD-40 repeat signature 430 444 IPR020472 -
Tsu01g00858 721 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 410 442 - -
Tsu01g00858 721 PANTHER WD REPEAT DOMAIN 44 8 720 IPR040324 -
Tsu01g00858 721 MobiDBLite consensus disorder prediction 152 191 - -
Tsu01g00858 721 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 299 - -
Tsu01g00858 721 MobiDBLite consensus disorder prediction 159 173 - -
Tsu01g00858 721 MobiDBLite consensus disorder prediction 77 100 - -
Tsu01g00858 721 Pfam WD domain, G-beta repeat 407 442 IPR001680 GO:0005515
Tsu01g00858 721 Pfam WD domain, G-beta repeat 267 297 IPR001680 GO:0005515
Tsu01g00858 721 Pfam WD domain, G-beta repeat 365 400 IPR001680 GO:0005515
Tsu01g00858 721 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 370 402 - -
Tsu01g00858 721 ProSiteProfiles Trp-Asp (WD) repeats profile. 410 442 IPR001680 GO:0005515
Tsu01g00858 721 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 8 720 - -
Tsu01g00858 721 ProSitePatterns Trp-Asp (WD) repeats signature. 564 578 IPR019775 -
Tsu01g00858 721 MobiDBLite consensus disorder prediction 77 103 - -
Tsu01g00858 721 SMART WD40_4 363 401 IPR001680 GO:0005515
Tsu01g00858 721 SMART WD40_4 537 577 IPR001680 GO:0005515
Tsu01g00858 721 SMART WD40_4 445 484 IPR001680 GO:0005515
Tsu01g00858 721 SMART WD40_4 496 536 IPR001680 GO:0005515
Tsu01g00858 721 SMART WD40_4 259 298 IPR001680 GO:0005515
Tsu01g00858 721 SMART WD40_4 404 443 IPR001680 GO:0005515
Tsu01g00858 721 SUPERFAMILY WD40 repeat-like 266 711 IPR036322 GO:0005515
Tsu01g00858 721 ProSiteProfiles Trp-Asp (WD) repeats profile. 370 402 IPR001680 GO:0005515
Tsu01g00858 721 Gene3D - 237 607 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00858 Tsu-Chr1 7771978 7776930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00858 362 574 U-box Gene Family AT2G33340 26.087 5.99e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00858 - - mtr:MTR_1g007740 1096.65