Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00852 ATGAGTTTTGGGAGCAAATGCAAATTTAAAGGCACAAGTTTGAATTCATCTGAAATCAAGATGAATACAAACCAGAAGGAGAAGATACTTGCTCAGTATGGTGCAGATGCTGAGCTTCTTGCTGAGTTTGAGCAATCTAGTCTTTATGGAAAATCATTTGACTATTCAAAGACTGTTCTTAATCCTCCAAATTCAGTTTCTGAGGAGAAAATGATTGCATATTTGTCTAGAATCCAAAGGGGTGGCTTTATCCAACCTTTTGGTTGTATGGTAGTAATGGAAGAACATACTTTTAGAATCATTGGTTATAGTGAAAATTGCTTTCAGATGTTGGGATTGGAGAGTGATATTGGTCCAGAACATTTTGTGAGTCTAATTGGTGTTAATGTCACAACATTGTTCACTCCTCTTTCTGGGTCTTCCCTCGTAAAAGTTCTAGCTTCTAGGGAAAATTCGCGTTTGAACCCTATTTGGGTTCATGCAAAGATTACAGGGAAGCCATTTTATGCCATGCTGCATAGGATTGATGTTGGAGTTGTGATTGATTTGGAGCCTGCATGTTCTAGTGGTCCTGCCTTGTCACAATCTGGTACATTTCAATCACAGAAATTAGCCTTTAGTGCAATTTCAAGGCTACAATCTTGTCGCTGCGAAGACATTAGTTTATTGTATGATACTGTTGTTGAGGAAGTTCAAAAGCTTACTGGATATGATAGGGTTATGATTTACAAGTTTCACGAGGATGATCACGGTGAGGTTGTATCTGAGATTCGAAGATCTGATTTAGAACCTTATTTAGGTTTGCATTATCCTGCCATAGATATCCCTCAAGCTGCTCGGTTTCTCTTCAAGCAAAATCGAGTGAGGTTGATTTCTGATTGCCATGCAAATCCCGTTACAGTCATTCAAAGTCAAGAACTAAAACAACCTATTTGTTTGGTAAACTCAACCCTTAGGTCACCACATGATTGTCACAAGCAATACTTGGCTAACATGGGCACAATTGCCTCTCTTGTTATAGCTATTataattaatgaaaatgatACAACTAGGCTTTGGGGTTTGCTAGCTTGTCATCATACTTCACCGCATCACGTGTCTTTCCCAGTTCGTCATGCGTGTGAGTTTGTAGTGCAGACTTTTGGACTGCAGCTTTACATGGATATTCAATTGGCATCACAGATGATAGAGAAGAGAATTCTTAAAACACAAACTTTGCTATGTGACATGCTCCTATGCGACGGACCATTTGGTATTGTGACTCAATCCCCGAGTATCATGGATCTTGTCAAGTGTGATGGTGCTGCATTGTATTATGATGAAAACTGTTGGTTGTTAGGCATAACTCCAACTAAATTACAGGTTAAAGACATTGCAGAATGGCTACTTCGTAATTATGGCGACTCGACAGGTTTGGCCACAGAAAGTTTGGCAGATGCTGGTTATCCAGGTGCTACTTTGTTGGGGGATGCAGTTTGTGGTATGACCTCGGCAATAATCAGTCCAAGACATATCTTGTTCTGGTTCAGGTCTCACACTGCTAAAGAAATAAAGTGGGGAGGAGCCAAGCACCATCCAACGGATAAGGATGATGGAGGAAAAATGAACCCAAGAACGTCGTTTAAAGTTTTTCTCGAAGTAGTTAAAAGCAAAAGTTTACCATGGGAAATTTCAGAAATCAATGCAATTCGCTCATTGCAACTAATTATGCGAGATTCGTTTAAAGATACAGACAATGCTGGTCCAAAGACTCTAGATGATGTTGAGAAAAGCGACGCTCCTATAGTAGGGATGCATGAAATTAGTTCAGTTGCGTTTGAAATGGTGAAATTAATCGAGACAGCAATAGTCCCGATATTTGGGGTTGATTCAAATGGTCGGATCAACGGATGGAATGTAAGAATTGCTGAATTGACAGGTTTGCAGGCTAGTAAAGCTATGGGAAAATCCTTAGTAAATGAAGTTGTAGATGCGGACTCACGTGAAACTGCGACAAATATTCTGAGAAGAGCCTTGCAAGGTCAAGATGAAAAAAATGttgagttaaaaataaatcGTTTTGTGCTTCATGGAGAAAAGGAAGTTATATATCTCATGGTCAATTCTTGCACAAGTAGAGACCACAAAAATGCTATAGTTGGGGTATGCTTTGTAGGCCAAGACATCACTTCCGAGAAAGTGGTTCTAAACAAATTCGTTAAGTTAGAAGGCGATTACAAAGCTATCATGCAGAGTCTTAATCCGCCGATTCCACCCatatttgcttctgatgaaaaTGCTTGTTGTTCCGAATGGAATGCAACAATGGAAAGGCTAACTGGATGGAAAAGAGATGAGGTCATAGGAAAAATGCTTCTCGGGGAAATCTTTGGAACTTTTTGTCGATTGAAAGGTCAAGATACACTTActgattttatgattttattgtaCCGCGGAATAAGTGGTCAACAAGATTCTGAAAAGTCACCATTTGGTTTTTATGATAGAAATGGAGAATTTATAGAGGCTTATATAACAACAAACAAAAGGACAGATGCAAGTGGAGATATAATCGGTTGTTTCTGCATCTTGCAGATTGTAACGGTTGATACGAATCAACCCTCTCAAGGACACAAGTCTAACTTAAGAGAAGAGATCTCAGAATCTAAGGAGTTAGCTTATATACTACAAGGGATTAAGAAGCCTTTAAATGGTATCCGATTCACACACAAACTTTTGGAAAATACAGATATATCCGAAAACCAGAAACAATTACTTGACACTAGTGAAGCGTGTGAAAAACAAATATTGACAGTTATTGAGGATACATATTTACACAGCATTAATGAAGGCACTTGGCAGTTAAACATGGAAGAATTTCTTCTGGGAAATATTTTACGTGTTGTCGTTAGTCAAGTCATGGAGTTGATAAAAGGAAATGACGTAAAGCTGTTTCATGAAATACCCGATGAAATCCAAACACTTCCTTTTTATGGCGATCAAATTCGACTTCAGGTGGTTTTATCAGACATTTTGTACAATGTAGTTAGCCATACACCATCTCCAAATGGCTGGATAGAAATCAAGATTTCACCCGGTTTAAAAATAATGCAAGATGGCAATGAGTTTATCCGTCTAATGTTCAGAATGACACATTCTGGTGAAGGTCTTCCTTCTGCCGTTCTACACGATATGTTTTATGGCGATAATCAGTGGACTACACAAGAAGGTCTAGGACTATACATGTCAAGAAAAATGCTTAGCAGGATGAATGGTGATGTACAATATgtaaaacaacaaaatagaTGCTATTTTCTCATTGGTCTTGAACTaagaacaagaaaataa 3327 0.3769 MSFGSKCKFKGTSLNSSEIKMNTNQKEKILAQYGADAELLAEFEQSSLYGKSFDYSKTVLNPPNSVSEEKMIAYLSRIQRGGFIQPFGCMVVMEEHTFRIIGYSENCFQMLGLESDIGPEHFVSLIGVNVTTLFTPLSGSSLVKVLASRENSRLNPIWVHAKITGKPFYAMLHRIDVGVVIDLEPACSSGPALSQSGTFQSQKLAFSAISRLQSCRCEDISLLYDTVVEEVQKLTGYDRVMIYKFHEDDHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRVRLISDCHANPVTVIQSQELKQPICLVNSTLRSPHDCHKQYLANMGTIASLVIAIIINENDTTRLWGLLACHHTSPHHVSFPVRHACEFVVQTFGLQLYMDIQLASQMIEKRILKTQTLLCDMLLCDGPFGIVTQSPSIMDLVKCDGAALYYDENCWLLGITPTKLQVKDIAEWLLRNYGDSTGLATESLADAGYPGATLLGDAVCGMTSAIISPRHILFWFRSHTAKEIKWGGAKHHPTDKDDGGKMNPRTSFKVFLEVVKSKSLPWEISEINAIRSLQLIMRDSFKDTDNAGPKTLDDVEKSDAPIVGMHEISSVAFEMVKLIETAIVPIFGVDSNGRINGWNVRIAELTGLQASKAMGKSLVNEVVDADSRETATNILRRALQGQDEKNVELKINRFVLHGEKEVIYLMVNSCTSRDHKNAIVGVCFVGQDITSEKVVLNKFVKLEGDYKAIMQSLNPPIPPIFASDENACCSEWNATMERLTGWKRDEVIGKMLLGEIFGTFCRLKGQDTLTDFMILLYRGISGQQDSEKSPFGFYDRNGEFIEAYITTNKRTDASGDIIGCFCILQIVTVDTNQPSQGHKSNLREEISESKELAYILQGIKKPLNGIRFTHKLLENTDISENQKQLLDTSEACEKQILTVIEDTYLHSINEGTWQLNMEEFLLGNILRVVVSQVMELIKGNDVKLFHEIPDEIQTLPFYGDQIRLQVVLSDILYNVVSHTPSPNGWIEIKISPGLKIMQDGNEFIRLMFRMTHSGEGLPSAVLHDMFYGDNQWTTQEGLGLYMSRKMLSRMNGDVQYVKQQNRCYFLIGLELRTRK 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00852 1108 SUPERFAMILY GAF domain-like 397 574 - -
Tsu01g00852 1108 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Tsu01g00852 1108 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 939 1094 IPR036890 -
Tsu01g00852 1108 Gene3D - 394 567 IPR043150 -
Tsu01g00852 1108 TIGRFAM sensory_box: PAS domain S-box protein 611 726 IPR000014 -
Tsu01g00852 1108 CDD HATPase_Phy-like 991 1104 IPR044767 -
Tsu01g00852 1108 SMART gaf_1 219 399 IPR003018 GO:0005515
Tsu01g00852 1108 ProSiteProfiles PAS repeat profile. 604 675 IPR000014 -
Tsu01g00852 1108 CDD PAS 750 858 IPR000014 -
Tsu01g00852 1108 Pfam GAF domain 219 386 IPR003018 GO:0005515
Tsu01g00852 1108 PRINTS Phytochrome signature 700 717 IPR001294 GO:0006355|GO:0009584
Tsu01g00852 1108 PRINTS Phytochrome signature 626 641 IPR001294 GO:0006355|GO:0009584
Tsu01g00852 1108 PRINTS Phytochrome signature 720 740 IPR001294 GO:0006355|GO:0009584
Tsu01g00852 1108 PRINTS Phytochrome signature 504 523 IPR001294 GO:0006355|GO:0009584
Tsu01g00852 1108 PRINTS Phytochrome signature 419 439 IPR001294 GO:0006355|GO:0009584
Tsu01g00852 1108 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Tsu01g00852 1108 PRINTS Phytochrome signature 607 623 IPR001294 GO:0006355|GO:0009584
Tsu01g00852 1108 PRINTS Phytochrome signature 537 555 IPR001294 GO:0006355|GO:0009584
Tsu01g00852 1108 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Tsu01g00852 1108 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Tsu01g00852 1108 SMART HisKA_10 880 944 IPR003661 GO:0000155|GO:0007165
Tsu01g00852 1108 Gene3D PAS domain 751 865 - -
Tsu01g00852 1108 PANTHER PHYTOCHROME E 23 1107 - -
Tsu01g00852 1108 PANTHER TWO-COMPONENT HISTIDINE KINASE 23 1107 - -
Tsu01g00852 1108 Gene3D PAS domain 77 322 - -
Tsu01g00852 1108 SUPERFAMILY PYP-like sensor domain (PAS domain) 611 718 IPR035965 -
Tsu01g00852 1108 SUPERFAMILY PYP-like sensor domain (PAS domain) 78 187 IPR035965 -
Tsu01g00852 1108 CDD PAS 615 722 IPR000014 -
Tsu01g00852 1108 SUPERFAMILY GAF domain-like 200 385 - -
Tsu01g00852 1108 CDD HisKA 880 935 IPR003661 GO:0000155|GO:0007165
Tsu01g00852 1108 ProSiteProfiles PAS repeat profile. 738 790 IPR000014 -
Tsu01g00852 1108 SMART pas_2 606 673 IPR000014 -
Tsu01g00852 1108 SMART pas_2 740 807 IPR000014 -
Tsu01g00852 1108 Gene3D - 924 1097 IPR036890 -
Tsu01g00852 1108 Gene3D PAS domain 606 726 - -
Tsu01g00852 1108 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 379 IPR016132 -
Tsu01g00852 1108 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 992 1095 IPR003594 -
Tsu01g00852 1108 Pfam Phytochrome region 403 576 IPR013515 GO:0006355|GO:0009584
Tsu01g00852 1108 Gene3D - 200 550 IPR029016 -
Tsu01g00852 1108 ProSiteProfiles Histidine kinase domain profile. 887 1106 IPR005467 -
Tsu01g00852 1108 SUPERFAMILY PYP-like sensor domain (PAS domain) 752 856 IPR035965 -
Tsu01g00852 1108 SMART HKATPase_4 992 1106 IPR003594 -
Tsu01g00852 1108 Pfam PAS fold 73 186 IPR013654 GO:0006355
Tsu01g00852 1108 Pfam PAS fold 738 858 IPR013767 GO:0006355
Tsu01g00852 1108 Pfam PAS fold 608 722 IPR013767 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00852 Tsu-Chr1 7725804 7729736 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00852 13 1106 Histidine Kinase Gene Family AT4G18130 57.428 0.0 1319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00852 K12123 - gmx:100808192 1692.17