LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g00847	ATGGGAAGAAAAGGAGGAGGTTGGTTCTCTTCTGTTAAGAAAGTTTTTAAGTCGTCATCATCGTCGTCTTCTAAAGACACGTCAGTGCCTGTCTCCACGCCGCCCGTGCAGCCGGACAAAAAGAAGGAAAACAGAGAGAAATTGGGGCATGAACCGGCAGAGGAGGTGTCGTTCGAGCATTTTCCTGCAGAGAGTTCACCTGATGATGTAACCAATGAAGAGAGTACGACATCAACGCCTGCAAGGGACGATAGAAGTCATGCCATTGCCGTTGCAGAAGCTACTGCAGCAGCTGCTGAAGCTGCCGTGGTAGCTGCTCAAGCAGCTGCTAAAGTTGTGAGATTGGCTGGTTATGGACGCCAATCTAAAGAAGAAAGAGCAGCAACATTCATTCAATCACATTATAGAGGATACCTAGCTCGACGTGCATTGCGCGCGTTGAAAGGATTAGTGAGGCTACAAGCATTGGTACGAGGACACAATGTGCGCAAGCAAGCGCAGATGACAATGCGATGTATGCAAGCATTAGTTCGGGTGCAAGCACGAGTGCGAGCACGGAGGATTCAATTGAGTCATGAGAATCTTGAGAAAGCAatggaagaagaggaagaatttTTTAGGCAACAACAAGAGACTATTACTAAGCCTATGAGTCCTATGAGGAGATCATCAggcattaataataataatggttgGGATAACAAGCATCAAAGTGTGAAAAAAGctaaagaaaatgatttaaGAAAACATGAAGCTGCAATGAAGAGGGAAAGAGCTCTTGCATATGCTTTCAATTATCAGCAGCAACATCAAAAGCAACATTTACATAGAAATTCAAATGGTGATGATGTTGACATGGGAACCTATCATCCAAATGATCAAGAAAAAACTCAATGGGGTTGGAACTGGTTGGAACATTGGATGTCATCACAACCCTACAATGTAAGACCCTTAGGTCCACGTGAGAGTTCTTACATGACACTTCCTTCAACAACATCAAACACAACAGATAACATGTCTGAAAAAACAGTTGAAATGGACATTGTTGCAACACCAAGTAGAAGCAACTACAATTTGGGCCTAATGGGCCAAGAATTTCATGAAGCAAGCCCAAGTTACAGTAGGCAGTATCAAAGACCACCTAGCCCAGGTAGGCCCAGCTACATGGCTCCAACTCAATCTGCAAAGGCTAAGGTTAGGGCTGAAGGCCCATTTAAGCAGAGGTTTTCATCTGGGTCTAACTGGAACTCGACTACTAAGGGAAGATCGGTTATCAGATCGACCTGTGACTCGTCTAGCTCGGGTGGTGGAACGACGTCTACTTACCAGTTTCCAAAAAGCCCAGGCCCAAATGTTAATGCGGTTCGTTCGGAGTCTAGACGGATTGTGGGTGGTAGTCAAGACTACACTGAGGATTGGGCCGTTCCACTTGGAGCCCATGGTTGGGcttaa	1452	0.4394	MGRKGGGWFSSVKKVFKSSSSSSSKDTSVPVSTPPVQPDKKKENREKLGHEPAEEVSFEHFPAESSPDDVTNEESTTSTPARDDRSHAIAVAEATAAAAEAAVVAAQAAAKVVRLAGYGRQSKEERAATFIQSHYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQARVRARRIQLSHENLEKAMEEEEEFFRQQQETITKPMSPMRRSSGINNNNGWDNKHQSVKKAKENDLRKHEAAMKRERALAYAFNYQQQHQKQHLHRNSNGDDVDMGTYHPNDQEKTQWGWNWLEHWMSSQPYNVRPLGPRESSYMTLPSTTSNTTDNMSEKTVEMDIVATPSRSNYNLGLMGQEFHEASPSYSRQYQRPPSPGRPSYMAPTQSAKAKVRAEGPFKQRFSSGSNWNSTTKGRSVIRSTCDSSSSGGGTTSTYQFPKSPGPNVNAVRSESRRIVGGSQDYTEDWAVPLGAHGWA	483

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g00847	483	Pfam	IQ calmodulin-binding motif	151	166	IPR000048	GO:0005515
	Tsu01g00847	483	Pfam	IQ calmodulin-binding motif	125	145	IPR000048	GO:0005515
	Tsu01g00847	483	MobiDBLite	consensus disorder prediction	217	235	-	-
	Tsu01g00847	483	MobiDBLite	consensus disorder prediction	407	454	-	-
	Tsu01g00847	483	SMART	iq_5	123	145	IPR000048	GO:0005515
	Tsu01g00847	483	SMART	iq_5	146	167	IPR000048	GO:0005515
	Tsu01g00847	483	Coils	Coil	240	260	-	-
	Tsu01g00847	483	Coils	Coil	192	212	-	-
	Tsu01g00847	483	MobiDBLite	consensus disorder prediction	18	34	-	-
	Tsu01g00847	483	PANTHER	IQ-DOMAIN 5-RELATED	1	456	-	-
	Tsu01g00847	483	Pfam	Protein of unknown function (DUF4005)	371	436	IPR025064	-
	Tsu01g00847	483	PANTHER	IQ-DOMAIN 21	1	456	-	-
	Tsu01g00847	483	Gene3D	-	121	172	-	-
	Tsu01g00847	483	MobiDBLite	consensus disorder prediction	369	470	-	-
	Tsu01g00847	483	MobiDBLite	consensus disorder prediction	38	62	-	-
	Tsu01g00847	483	MobiDBLite	consensus disorder prediction	217	246	-	-
	Tsu01g00847	483	ProSiteProfiles	IQ motif profile.	148	175	IPR000048	GO:0005515
	Tsu01g00847	483	ProSiteProfiles	IQ motif profile.	124	152	IPR000048	GO:0005515
	Tsu01g00847	483	MobiDBLite	consensus disorder prediction	18	86	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g00847	Tsu-Chr1	7691284	7696700	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g00847	1	456	IQD Protein Family	AT3G49260	50.105	4.64e-104	317

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g00847	-		-	gmx:100798026	522.702