Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00844 ATGATGGATTTGGATAGTATTGAGTGTGTTTCATCTTCTGATGGAATGGATGAAGATGAGATCCAACATCGTATTCTTCATCCACAtccacatcatcatcatcatcatcatactGAGTTTTCTTCTTTGAAACCTCGTAatggaaataataataatcatgttGTTGGTTCTACAGCTATTGCTCCTGCAACTAGTGTTCATGAGTTGTTGGAATGTCCTGTTTGTACTAATTCAATGTATCCTCCAATTCATCagTGCCACAATGGTCACACATTATGTTCCACATGTAAAACAAGGGTGCATAATCGATGTCCGACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTAGAGAAGGTTGCCGAATCACTCGAGTTACCATGCAAGTACTATTCTCTTGGATGTCCTGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGATGATATGCAATTTTAGACCATACACTTGTCCTTATGCTGGATCAGAGTGCTCTGCTGTTGGCGATATTTCCTACCTCGTTGCGCATTTGAGGGACGATCATAAAGTGGACATGCACACAGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCGCGTGAAGTAGAGAATGCTACTTGGATGCTCACTGTTTTTCATTGTTTTGGCCAATACTTTTGCCTTCACTTTGAAGCTTTCCAGCTAGGCATGGCTCCAGTTTACATGGCATTCCTTCGTTTCATGGGAGACGAGAACGAAGCTCGGAACTATACTTATAGCCTCGAGGTTGGAGCAAATGGAAGAAAACTTACATGGGAGGGCACACCACGGAGTATCCGTGATAGCCACCGTAAAGTTCGAGATAGCCACGACGGTCTCATAATTCAACGAAATATGGCCCTCTTTTTCTCTGGTGGTGATAGGAAGGAATTGAAACTAAGAGTCACAGGAAGAATATGGAAAGAACAACAGAATCCAGATGGTGGAGTGTGCATACCAAATCTTTGCAACTGA 1005 0.405 MMDLDSIECVSSSDGMDEDEIQHRILHPHPHHHHHHHTEFSSLKPRNGNNNNHVVGSTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHEMICNFRPYTCPYAGSECSAVGDISYLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYTYSLEVGANGRKLTWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCN 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00844 334 SUPERFAMILY RING/U-box 64 112 - -
Tsu01g00844 334 SUPERFAMILY TRAF domain-like 125 317 - -
Tsu01g00844 334 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 180 313 IPR008974 GO:0005515
Tsu01g00844 334 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 2 325 - -
Tsu01g00844 334 MobiDBLite consensus disorder prediction 29 52 - -
Tsu01g00844 334 CDD RING-HC_SIAHs 70 108 - -
Tsu01g00844 334 ProSiteProfiles Zinc finger RING-type profile. 72 108 IPR001841 -
Tsu01g00844 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 124 IPR013083 -
Tsu01g00844 334 CDD Sina 186 314 - -
Tsu01g00844 334 Pfam Seven in absentia protein family 114 313 IPR018121 GO:0005737|GO:0006511|GO:0007275
Tsu01g00844 334 ProSiteProfiles Zinc finger SIAH-type profile. 125 185 IPR013010 GO:0008270
Tsu01g00844 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 179 IPR013083 -
Tsu01g00844 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 2 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00844 Tsu-Chr1 7636968 7642156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00844 56 320 C3H Transcription Factor Family AT2G41980 78.731 2.10e-161 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00844 K04506 - fve:101313744 636.721