Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00843 ATGGACTTCGATAGACTTGGACCGTTGGATCCAGGTGGTTCATCTCGTCGCTCCACCGCACCTCTAACAAACTCCACCACATCCAATTCATCacagaaaaacaaaaagcttATCATGATTTCAATCCTCGCCGTCACTTTAATCATCGCCTCCGCCCTCTCCGCCACACTGGTCACCGTAATCCGTTCCCGCGCTTCATCCAATGATCAAAATTCCCCAAACCACCGCGCCAAACCAACTCAAGCAATCTCCCGAACCTGTAGCAAAACAAGATTCCCCACACTTTGCATAAACTCCCTCCTCGATTTCCCCGGCTCAACCGCCGCCTCCGAGCAACAACTAGTTCATATCTCATTCAACATGACACACCGCCACATCAGCAAAGCACTCTTCGCTTCTTCGGGCCTATCCTATGCAGTCGCCAACTCTAAAGTCCGCGCTGCATATGAGGATTGCCTGGAACTAATGGACGAATCCATGGACTCAATCAGAATGTCCATGGATTCGTTATCAACCATGTCATCAACTCTTTCCCGTGACGATGAACCATCAAGTGTCGCGGGATCGGAGGATGTGATGACATGGCTGAGCGCCGCGTTAACTAACCAAGACACATGTCTGGAAGGATTTGAAGACATTAGCGGCACCGTTAAGGATCAAATGGTTGATAATTTGAAGGATTTATCAGAACTCGTGAGTAATTCTCTCGCGATATTTTCAGGGAGTGGAGATTATGATTTAACTGGAGTTCCGATACAGAATAAGAGAAAGTTATTGGGAATTGAGAAACGAGATAATGATGATGTTGTCGGCGATATCTCACGAGAATTTCCGAAATGGTTTAAGAAACGAGAtaggagattgttgagtttacCGGTATCGGAGATTCAAGCTGATGTTATCGTTTCGAAGAATGGTAACGGAACGGTGAAGACAATTACTGAAGCGATTAAAAGAGCACCGGATCATAGTAGCCGTCGGTTCATAATCTATGTGAGGGCAGGAAgGTATGAAGAGAATAATTTAAAGGTgggaaaaaagaaaaccaaTATTATGTTTATAGGAGATGGAAGGGGTAAAACTGTCATTACAGGAAAAAGAAGTGTTGGAGATGGCATGACTACTTTCCACACCGCTTCCTTTGCTGCTAGTGGCCCTGGCTTCATGGCACGTGATATCACATTTGAGAACTATGCTGGACCGGAGAAGCACCAAGCCGTGGCGCTCCGTGTTGGAGCAGATCACGCGGTGGTGTACCGTTGCAACATTGTGGGGTACCAAGACGCATGCTATGTGCACTCCAACCGTCAATTCTTTCGTGAATGCAACATTTATGGCACCGTAGATTTTATATTTGGAAATGCTGCGGTTGTTTTTCAAAAGTGCAACATTTATGCTCGCAAGCCCATGGCCCAacaaaagaacacaatcacggCCCAAAATAGAAAAGACCCAAATCAAAATACGGGTATATCCATTCATGATTGTCGGATCCTACCTGCCCCAGATCTAGCCTCATCAAAGGGCATCGAAACATATTTAGGTCGTCCATGGAAAATGTATTCTAGGACCATTTATATGTTGTCCTATATGGGTGGTCACGTGCAACCACGCGGATGGTTAGAATGGAACGGAGACTTTGCTTTAAATACATTGTATTATGGTGAGTACATGAATTTTGGGCCGGGTGCAGCTGTCGGACAAAGGGTCAAATGGCCTGGATACCGAGTTATTACTTCTACCGTGGAGGCCAACAGATACACCGTGTCCCAATTCATCTCCGGTTCGTCGTGGTTACCATCTACAGGAGTGGCATTTTTGGCCGGGTTATCCACTTGA 1839 0.4437 MDFDRLGPLDPGGSSRRSTAPLTNSTTSNSSQKNKKLIMISILAVTLIIASALSATLVTVIRSRASSNDQNSPNHRAKPTQAISRTCSKTRFPTLCINSLLDFPGSTAASEQQLVHISFNMTHRHISKALFASSGLSYAVANSKVRAAYEDCLELMDESMDSIRMSMDSLSTMSSTLSRDDEPSSVAGSEDVMTWLSAALTNQDTCLEGFEDISGTVKDQMVDNLKDLSELVSNSLAIFSGSGDYDLTGVPIQNKRKLLGIEKRDNDDVVGDISREFPKWFKKRDRRLLSLPVSEIQADVIVSKNGNGTVKTITEAIKRAPDHSSRRFIIYVRAGRYEENNLKVGKKKTNIMFIGDGRGKTVITGKRSVGDGMTTFHTASFAASGPGFMARDITFENYAGPEKHQAVALRVGADHAVVYRCNIVGYQDACYVHSNRQFFRECNIYGTVDFIFGNAAVVFQKCNIYARKPMAQQKNTITAQNRKDPNQNTGISIHDCRILPAPDLASSKGIETYLGRPWKMYSRTIYMLSYMGGHVQPRGWLEWNGDFALNTLYYGEYMNFGPGAAVGQRVKWPGYRVITSTVEANRYTVSQFISGSSWLPSTGVAFLAGLST 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00843 612 MobiDBLite consensus disorder prediction 1 30 - -
Tsu01g00843 612 CDD PMEI-like_3 87 240 - -
Tsu01g00843 612 Gene3D - 293 610 IPR012334 -
Tsu01g00843 612 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 81 240 IPR035513 -
Tsu01g00843 612 MobiDBLite consensus disorder prediction 16 30 - -
Tsu01g00843 612 ProSitePatterns Pectinesterase signature 2. 444 453 IPR033131 -
Tsu01g00843 612 Gene3D Invertase/pectin methylesterase inhibitor family protein 80 241 IPR035513 -
Tsu01g00843 612 PANTHER PECTINESTERASE 25 610 - -
Tsu01g00843 612 SUPERFAMILY Pectin lyase-like 296 609 IPR011050 -
Tsu01g00843 612 SMART PMEI_2 78 238 IPR006501 GO:0004857
Tsu01g00843 612 PANTHER PECTINESTERASE 25 610 - -
Tsu01g00843 612 Pfam Pectinesterase 299 595 IPR000070 GO:0030599|GO:0042545
Tsu01g00843 612 TIGRFAM PME_inhib: pectinesterase inhibitor domain 54 239 IPR006501 GO:0004857
Tsu01g00843 612 Pfam Plant invertase/pectin methylesterase inhibitor 82 238 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00843 Tsu-Chr1 7630322 7634450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00843 1 611 Carbohydrate Esterase AT5G53370 61.138 0.0 781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00843 - - gmx:106796002 947.192