Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00840 ATGCAGAGTGACTTAGTTCAATCATCTGCAATGTCggaatttgatttatttgtagAGGGAGATTTGTTCAAAGCGCCTGAGACGATTATGGAAGAACCGGCGATGGACCTTGATCCAATGCAAGCAGCCATGTCAATGATATCTTGTGGGGAAAATGTGTCATCACAAGGTCTAAAATCTTCGGAGATTGACGATGTGCTTCAAAATGAACAGCTTTTGAGTGAGGTATACTATGAATGCAAAAAGGATATGTTAGAAAAGGCGGCTATAGAGTCACCTCTTTCTGAAATTCTTGATATCAAGATTCCTGCTCTGAACATCGACGAGAATTCGGTTCAAGAAAACAAACCAATTCCTGATGTACTATTACCGAAGAGTGTCAGTTCCGGAAGTTTGAATTCAATGGATTGGATGAATGGAGCTGCAATGAAGCCTGCTTTCCTTGATTTCCCTCGAATTGATTTCAGCGCGGTTTATGGAATGCGGAGAGCATTTAGTGAAGGAGATATAAAGACTCTTGGCAATGGTAACATGAGTGTTGGACAATCTACTCTTGAGAGGCCTTTTCTTCTCAGCAACTGCACGAGCGAGCAACGTCAAGAAAAACTCTCTAGATATAGGAATAAGAAGACAAGGAGAAACTTTGGGAGGAAAATCAAGTATGCCTGCAGGAAGGCGCTGGCTGACAGTCAACCAAGAATCCGTGGAAGATTTGCGAAAACGGAGGAATATGATGTCAAAAGACAATGA 750 0.4107 MQSDLVQSSAMSEFDLFVEGDLFKAPETIMEEPAMDLDPMQAAMSMISCGENVSSQGLKSSEIDDVLQNEQLLSEVYYECKKDMLEKAAIESPLSEILDIKIPALNIDENSVQENKPIPDVLLPKSVSSGSLNSMDWMNGAAMKPAFLDFPRIDFSAVYGMRRAFSEGDIKTLGNGNMSVGQSTLERPFLLSNCTSEQRQEKLSRYRNKKTRRNFGRKIKYACRKALADSQPRIRGRFAKTEEYDVKRQ 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00840 249 Pfam CCT motif 199 241 IPR010402 GO:0005515
Tsu01g00840 249 ProSiteProfiles CCT domain profile. 199 241 IPR010402 GO:0005515
Tsu01g00840 249 PANTHER CCT MOTIF FAMILY PROTEIN 2 247 - -
Tsu01g00840 249 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00840 Tsu-Chr1 7577935 7581196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00840 174 243 C2C2-CO-like Transcription Factor Family AT5G57660 44.444 6.27e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu01g00840 CCT 1.5e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00840 - - gmx:100814332 387.882