Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00839 ATGATAATTAAGAAGAATCTCAAATCGGAAATGCCGAGTCGGAAACGGAGTAGACTCGGTAACtcggaggaagaagaagatgagttAAAGTTGACTCAgatgaagaataagaagaagaaaattaacGGTAATTATCCGTTAAATCTTCTCGCCGGTGCAATTCCGGCTAGTATTAAGGGATTACTCGGTGCAATCCCGGCAACCACCGTGGCATCATCGGAAAATGGATTTTCTGTATCTAACGGAAAAGCTGATATTAAGCACGTGGCGAACGGAACACGGCCGCCACTTGTTCGAACGTCACGCGGACGGCTTCAAGTGTTGCCGTCGCGGTTTAATGATTCTGTTATTGTGAATTGGAAGAAGGATGGAAGGAGTGGTGCCGGTGCTGGTGCCGGTGTCACTGCCGCCACTGCCACGAGCTTTcgtgaatttgaatttgatgaattAAGTTTGAAGAATTATGGTGGAAAAGGGAAGAATGGTGCAAATGCAACTTCCGGCCGCCGCGGGTATTCAGTTTTGTGTGAGGAAGTCTTGCATAAGAATTTTGGTGTTGCTGCTGCTAACAATAAAGAATTGAGTTTGCGTGAGATTTTTGAGGAAACAAAGTTGAATAATGAAGTTTTgaagaaggaagagaagaagaagaaagaagggtTATTTGGGCCAGAAGATTTTTATGCAGGTGATATAGTTTGGGCAAAAGCTAAGAGAAAGGAACCTTTTTGGCCTGCAATTGTTCTTGAACCAATGTCTCAAGCACCTGAGCTGGTTTTGAGATCATGTATAGCTGATGCTACTTGTGTCATGTTTCTTGGATACTCTAAGAATGAAAATCACAGGGATTTTGCATGGGTGAAGTGTGGAATGATTTTTCCATTTATGGATAATGTAGAAAGGTTTCAAGAGCAGTATGAGTTGAGTTACTGTGATTCATCGCAATTTCAAGCGGCAGTTGAGGAGGCCTTTTTGGCTGATCAGGGAATTGTAGAGAATATTATAGAAGATATAAATGCGGTGGCTGGTAATAATGGTTGCAGTAGTGATTCTATTCTTAAAGAATTTCTGAGTGTCAGTGCTTCAAAACAGAATGCGGATGGTCTTGTTCAGAAGAAGGATTCATTTAACAGAAAGAAAAACGTGCGACTTTGTGATGAATGTGGATTGGACCTTCCTTTCAATACGTCAAAGAAAACAAAGGATTTGACTCCCGGTGGTCAACTCCTATGTAAAACATGTGCTAGGTtgacaaaatcaaaacattattGCGGCATATGTAAGAAAGTTTGGAATCAATCGGATAGCGGAAGTTGGGTCTGTTGTGATGGATGTAAAGTGTGGGTGCATGCCGAATGTGACAAAATCTCCAGCATCCTTTTCAAGAATCTCGGAAGCACTGATTATTTCTGTCCTGCTTGCAAAGTGAAgtttaattttgaattatcTGATTCAGAAAAGTCACATCCAAAAGTCAAATGGAACAAAAACAATGGCCAGCTAGAACTTCCAAAGAAAGTCACTGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTTCACTTAGTAATGTGCAAGTGTGGTTTTTGTGAGACTGAAAAGCAAGCACTTAGTGAATGGGAACGCCACACAGGTTCCAAATTCAGAAACTGGAAAACAAGCATTCAGGTTAAAGGATCCATGGTATCACTGGAACAATGGATGCTGCAGTTGGCTGAATTTCATGCTAAAGCTATAGTTTCTGCCAAACCTAAAAGACCATCCTCAAAAGCAAGAAAGCAGAAATTGCTTACCTTTCTGCAAGACAAGTATGAACCTGTTTGTGCTAAGTGGACTACAGAACGATGTGCTGTATGTAGATGGGTTGAAGATTGGGACtacaacaaaattataatcTGCGTCAGATGTCAAATAGCTGTTCATCAAGAATGCTATGGAGCAAGACATGTTCGAGACTTTACATCGTGGGTTTGTAAAGCTTGTGAAACACCAGACATCACGCGAGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCTACTGATATTGATCCATTATGGGTTCATGTCACTTGTGCCTGGTTTCGACCTGAAGTATCTTTTGCTAGTGATGAGAAAATGGAACCTGCTTTGGGTATCTTGAGTATTCCATCAAATTCTTTTGTGAAGATATGTGTTATTTGTAAGCAAATCCATGGTTCGTGCACACAATGTGTCAAGTGTTCCACATTTTTCCATGTCATGTGTGCATCAAGGGCCGGTTATCGCATGGAGTTGCATTGTTCAGAGAAAAATGGTAAACAGACAACAAGAATGGTTTCTTATTGTGCTTATCACAGAGCTCCCAATCCAGACACTGTATTGATTATACAAACCCCTCATGGGGTCATTTCAACTAAAATCCTTATCCAAAATAAGAGAAAAGTTGGGTCAAGATTAATTTCATCGAACAGAATAAAGGTAGAAGAAACTCCTCCAGCAGATAACACCGAACATGATCCATTTTCTTCTGCTAGGTGCCGAGTCTTTGTAAGAACAAACCACACAAAAAAGAGAGCAGCTGATGAAGCCATTCCTCATAAAGTGAGAGGTCACTGCCATCATTCTTTAGATGCAATACAGAGATTAAATACATGCAAAGTGGTAGATGAGTCTCAGACATTTTCATCGTTCAGGGAACGCCTTCATCACTTACAGAGAACCGAAAATGAACGAGTGTGCTTTGGTAGATCAGGCATACATGGATGGGGTCTATTTGCACGAAAAAGTATCCAAGAAGGAGAAATGGTCCTCGAATATCGTGGTGAACAAGTAAGGCGCAGCGTTGCAGATCTAAGGGAGGCACGATATAAATTAGAAAGGAAAGACTGCTATcTGTTCAAAATAAGTGAAGAAGTGGTAGTTGATGCAACTGATAAAGGAAATATTGCGCGGCTAATTAACCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGTCATGACGAGAGCCGGATCGCACTCATTGCCAAGACTACCGTAGCTGCTGGTGATGAGCTAACGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTCAAAGTCCCTTGTTTATGTAAAGCTCCAAACTGCAGAAAATTTATGAATTAG 3153 0.3942 MIIKKNLKSEMPSRKRSRLGNSEEEEDELKLTQMKNKKKKINGNYPLNLLAGAIPASIKGLLGAIPATTVASSENGFSVSNGKADIKHVANGTRPPLVRTSRGRLQVLPSRFNDSVIVNWKKDGRSGAGAGAGVTAATATSFREFEFDELSLKNYGGKGKNGANATSGRRGYSVLCEEVLHKNFGVAAANNKELSLREIFEETKLNNEVLKKEEKKKKEGLFGPEDFYAGDIVWAKAKRKEPFWPAIVLEPMSQAPELVLRSCIADATCVMFLGYSKNENHRDFAWVKCGMIFPFMDNVERFQEQYELSYCDSSQFQAAVEEAFLADQGIVENIIEDINAVAGNNGCSSDSILKEFLSVSASKQNADGLVQKKDSFNRKKNVRLCDECGLDLPFNTSKKTKDLTPGGQLLCKTCARLTKSKHYCGICKKVWNQSDSGSWVCCDGCKVWVHAECDKISSILFKNLGSTDYFCPACKVKFNFELSDSEKSHPKVKWNKNNGQLELPKKVTVLCNGVEGIYFPSLHLVMCKCGFCETEKQALSEWERHTGSKFRNWKTSIQVKGSMVSLEQWMLQLAEFHAKAIVSAKPKRPSSKARKQKLLTFLQDKYEPVCAKWTTERCAVCRWVEDWDYNKIIICVRCQIAVHQECYGARHVRDFTSWVCKACETPDITRECCLCPVKGGALKPTDIDPLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCVKCSTFFHVMCASRAGYRMELHCSEKNGKQTTRMVSYCAYHRAPNPDTVLIIQTPHGVISTKILIQNKRKVGSRLISSNRIKVEETPPADNTEHDPFSSARCRVFVRTNHTKKRAADEAIPHKVRGHCHHSLDAIQRLNTCKVVDESQTFSSFRERLHHLQRTENERVCFGRSGIHGWGLFARKSIQEGEMVLEYRGEQVRRSVADLREARYKLERKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGHDESRIALIAKTTVAAGDELTYDYLFDPDEPDEFKVPCLCKAPNCRKFMN 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00839 1050 SUPERFAMILY FYVE/PHD zinc finger 420 479 IPR011011 -
Tsu01g00839 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 667 786 IPR013083 -
Tsu01g00839 1050 ProSiteProfiles PWWP domain profile. 229 298 IPR000313 -
Tsu01g00839 1050 SUPERFAMILY FYVE/PHD zinc finger 616 680 IPR011011 -
Tsu01g00839 1050 Pfam PWWP domain 230 323 IPR000313 -
Tsu01g00839 1050 ProSiteProfiles Extended PHD (ePHD) domain profile. 669 784 IPR034732 -
Tsu01g00839 1050 Pfam PHD-finger 630 664 - -
Tsu01g00839 1050 SUPERFAMILY Tudor/PWWP/MBT 222 326 - -
Tsu01g00839 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 666 IPR013083 -
Tsu01g00839 1050 ProSiteProfiles Zinc finger PHD-type profile. 421 477 IPR019787 -
Tsu01g00839 1050 MobiDBLite consensus disorder prediction 1 27 - -
Tsu01g00839 1050 Pfam SET domain 919 1024 IPR001214 GO:0005515
Tsu01g00839 1050 Pfam PHD-zinc-finger like domain 671 783 - -
Tsu01g00839 1050 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 418 478 IPR013083 -
Tsu01g00839 1050 CDD PHD_ATX3_4_5_like 617 663 IPR042011 -
Tsu01g00839 1050 SUPERFAMILY SET domain 865 1047 IPR046341 -
Tsu01g00839 1050 SMART PostSET_3 1034 1050 IPR003616 -
Tsu01g00839 1050 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 1050 IPR025780 -
Tsu01g00839 1050 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1050 - -
Tsu01g00839 1050 ProSiteProfiles Post-SET domain profile. 1034 1050 IPR003616 -
Tsu01g00839 1050 PANTHER PHD FINGER PROTEINS 1 1050 - -
Tsu01g00839 1050 ProSiteProfiles SET domain profile. 908 1025 IPR001214 GO:0005515
Tsu01g00839 1050 SMART PHD_3 423 475 IPR001965 -
Tsu01g00839 1050 SMART PHD_3 617 664 IPR001965 -
Tsu01g00839 1050 SMART PHD_3 728 784 IPR001965 -
Tsu01g00839 1050 Gene3D SET domain 805 1050 IPR046341 -
Tsu01g00839 1050 Gene3D - 224 329 - -
Tsu01g00839 1050 SMART set_7 908 1031 IPR001214 GO:0005515
Tsu01g00839 1050 CDD SET_SETD1-like 895 1046 - -
Tsu01g00839 1050 CDD PHD_TCF19_like 424 474 - -
Tsu01g00839 1050 CDD ePHD_ATX3_4_5_like 672 783 IPR041955 -
Tsu01g00839 1050 ProSitePatterns Zinc finger PHD-type signature. 618 663 IPR019786 -
Tsu01g00839 1050 ProSiteProfiles Zinc finger PHD-type profile. 615 666 IPR019787 -
Tsu01g00839 1050 Pfam PHD-finger 423 476 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00839 Tsu-Chr1 7564208 7574135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00839 618 783 C2H2 Transcription Factor Family AT3G14740 34.857 5.25e-20 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu01g00839 zf-HC5HC2H_2 7.3e-28 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00839 - - gmx:100775276 1541.55