Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00815 ATGCAAaAGGACAAAGAAGTTGTTAGCAAGGAAGGGAAAGAAATGGAAACGGAAACGGAAGGAACTCGTGCGAAAGAAGAAACCCTACCTCCTGGATTTCGATTTCATCCGACCGATGAAGAACTCATTACTTATTATCTTGTAAACAAGATTTCAGATGCTGATAATTTTACTTGCAAAGCAATAGGTGATGTAGATCTCAACAAGTGCGAGCCATGGGAGCTTCCTGGTAGGAAGGCAAAGATGGGTACAAAAGAATGGTACTTCTTCAGTCTAAGAGATCGTAAATATCCAACAGGTGTGAGAACTAATAGAGCAACAAACACTGGATATTGGAAAACCACAGGGAAAGACAAAGAGATATTCAATACTGTTACATCTGAGTTGGTTGGTATGAAGAAGACTTTGGTGTTTTACAAAGGTAGAGCTCCTAGAGGTGAAAAATCCAACTGGGTCATGCATGAATACCGTATTCATTCTAAATCAACCTTCAGAACCAACAagCAAGATGAATGGGTGGTTAGCAGGGTATTCCGAAAAAGTGCAGGTGCAAAGAAGTACCCTTCATCAAACCCTACAAGATCAGTCATGATGAATCCTTACAATATCAATCTAGAAGTTGCTCCTCCTAACttcaacaataataacatgCCACCACCACAAATGATGCAGTTAGGACTAGATTCTGCTACTCATTTCCAGCTCTATGGAAGAAACTACATCAACACTGCAGAAGTTCTAAGAACTGGTATACCAATGCAACAATATTCCAATATGAATTTTCcagtatcatcatcatcaccttTAGGAGTTGGAGATGTTGGAGGATTCACTATTTCAGGGCTTAATTTAAATCTTGGTGGATCAACTTCATCACAACCTATTTTAAGGCCAATGCCATCAACTGCTATGCATGATTTTAGCTCTAACATGATGATGACAGGGTATGGTGGAGGAGATCAAGTGAATAATGGAAACCCTAATAGGTACAATATGCAGGGTAGTATGGATCATTGTGTGGATCTTGATCATTACTGGCCACCTTCTTATTGA 1053 0.3818 MQKDKEVVSKEGKEMETETEGTRAKEETLPPGFRFHPTDEELITYYLVNKISDADNFTCKAIGDVDLNKCEPWELPGRKAKMGTKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNTVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTFRTNKQDEWVVSRVFRKSAGAKKYPSSNPTRSVMMNPYNINLEVAPPNFNNNNMPPPQMMQLGLDSATHFQLYGRNYINTAEVLRTGIPMQQYSNMNFPVSSSSPLGVGDVGGFTISGLNLNLGGSTSSQPILRPMPSTAMHDFSSNMMMTGYGGGDQVNNGNPNRYNMQGSMDHCVDLDHYWPPSY 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00815 350 Pfam No apical meristem (NAM) protein 30 158 IPR003441 GO:0003677|GO:0006355
Tsu01g00815 350 ProSiteProfiles NAC domain profile. 29 180 IPR003441 GO:0003677|GO:0006355
Tsu01g00815 350 SUPERFAMILY NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Tsu01g00815 350 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 317 - -
Tsu01g00815 350 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 14 317 - -
Tsu01g00815 350 MobiDBLite consensus disorder prediction 1 33 - -
Tsu01g00815 350 Gene3D NAC domain 38 184 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00815 Tsu-Chr1 7341728 7344639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00815 23 347 NAC Transcription Factor Family AT2G24430 52.727 6.45e-107 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu01g00815 NAM 3.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00815 - - lja:Lj1g3v2035130.1 439.499