Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu01g00814 | ATGCCTCGTGGAACACTTGAAGTTGTTCTCATAGGAGCCAAAGGCCTTTGTGACACTGATTTTTTCAaGAAAATGGACCCCTATGTGATCCTCACGTATCGGACTCAAGAGCACAAAAGCAGTGTAGCCAAAAATGCAGGTTCTAATCCTCGTTGGAATGAAAGTTTCCTCTTCACAGTTTGTGACAATGTTGCTGAACTTAATTTGAGGCTAATGGATGAAGATACATTTACCAAGGATGACTTTCTTGGTGAGGCAAAAATTCATTTGGGACCAGTTCTTGAGTATGGGAGTGTACCAGAAACTGCTTATAATGTTGTGAAGCAGCAGAATTACTGTGGAGAGGTTCATGTGGCTCTCACTTTTCATCCTGagAGTGGGCGTTACTGA | 390 | 0.4205 | MPRGTLEVVLIGAKGLCDTDFFKKMDPYVILTYRTQEHKSSVAKNAGSNPRWNESFLFTVCDNVAELNLRLMDEDTFTKDDFLGEAKIHLGPVLEYGSVPETAYNVVKQQNYCGEVHVALTFHPESGRY | 129 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu01g00814 | 129 | SMART | C2_3c | 5 | 102 | IPR000008 | - | |
| Tsu01g00814 | 129 | PANTHER | C2 DOMAIN-CONTAINING | 1 | 129 | - | - | |
| Tsu01g00814 | 129 | ProSiteProfiles | C2 domain profile. | 1 | 103 | IPR000008 | - | |
| Tsu01g00814 | 129 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 1 | 126 | IPR035892 | - | |
| Tsu01g00814 | 129 | Gene3D | C2 domain | 2 | 125 | IPR035892 | - | |
| Tsu01g00814 | 129 | PANTHER | ELICITOR-RESPONSIVE-LIKE PROTEIN | 1 | 129 | - | - | |
| Tsu01g00814 | 129 | Pfam | C2 domain | 4 | 104 | IPR000008 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu01g00814 | Tsu-Chr1 | 7336076 | 7338894 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu01g00814 | 4 | 94 | C2H2 Transcription Factor Family | AT4G21160 | 36.264 | 5.30e-14 | 65.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu01g00814 | - | - | gmx:100814819 | 199.519 |