Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00812 ATGTTGATCAACACCAGAAATGGTTCTCGCAGGCATCAATCTCATTCACAGATACATGACACATATGTGGTGCCCTTGTCTAAACTTCACGAGCGTCAATGGGATTTGCAATGCCAAGTCGTCGAAGATATGAAAAGAGGTTTCAAATGCAATAACCAAGCTTTTAGCTCCGCGTCGTCAGAGAATTTCATTGACCCACTTGTGAGGTTTCTGAGCACAGCTTATGATAAGCATGACACAAAAGCTCTTAGAAGTGGAAGTCAGTTGCTGTTGGAATTTACAAAGTACTGCAGAAATTGTGTGACAAACTTAAGCGAAGATACATACAGTGTGTTGGCAAGTCTCCTAGAGTCAGATGTGATTGGAGAAGCTCTTGCCATACTAGAAACATTGTCGAACCAGTGGTCCAATAAAGCTAACGATGTAGCTTCCAGTGCACCAACCTCTATTTCAAAGATCCTTGATTCTGATGGTAGGATTTCTATTGTTGAAACTAATGGATGCATGTTTCGTGTTGTTGAAGTACTTGGCTCTGACACCGATGAAGAAAAGGAACCGGCACTAGCTATTGTACTCTCTTTGTGCTCTCAACGCTTGGAATATTGTGAGCTGGTTATGTACGAGGGTATTATACCATATCTTTGTCAATATCTCCAATAA 660 0.4121 MLINTRNGSRRHQSHSQIHDTYVVPLSKLHERQWDLQCQVVEDMKRGFKCNNQAFSSASSENFIDPLVRFLSTAYDKHDTKALRSGSQLLLEFTKYCRNCVTNLSEDTYSVLASLLESDVIGEALAILETLSNQWSNKANDVASSAPTSISKILDSDGRISIVETNGCMFRVVEVLGSDTDEEKEPALAIVLSLCSQRLEYCELVMYEGIIPYLCQYLQ 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00812 219 PANTHER U BOX DOMAIN-CONTAINING 156 215 - -
Tsu01g00812 219 PANTHER U BOX DOMAIN-CONTAINING 8 156 - -
Tsu01g00812 219 Gene3D - 33 219 IPR011989 -
Tsu01g00812 219 SUPERFAMILY ARM repeat 27 219 IPR016024 -
Tsu01g00812 219 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 156 215 - -
Tsu01g00812 219 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00812 Tsu-Chr1 7310239 7311620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00812 158 209 U-box Gene Family AT4G36550 46.154 5.86e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00812 - - gmx:100798951 228.794