Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00811 ATGAGATTCGGAGGAGTGCTTCGGAATATTTTACGccctctctcactctcaccaGCAAGGATTACTGTGACTTCACAAATCTCCTCCACATTGCCGTTTCATGCTTCTTTGCCATCTTCCTGCAAACCACCTCAGTTCCTTCTTCCCTTTTTGAACCACTTTCACAGCTTGACAGACACTCGTTTTCCCAAGAGACGACCCTCTGATAAGCCTCGTCGAAAACGGGCAAGCTTGAGACCCTCTGGGCCTTATGCTTGGGTTCAACACACAACTGGCGAGACCATACTTCCCAATAAGCCTAATGAAGGGAGCATCAAGAGAAGAAATGAGAAGAAACGCATGAGGCAGCGCCGTGCCTTTATACTGGcggaaaagaagaaaaggaaagctCAAATGCAAGAAGCTAAGCGGAGGAAAAGCATTAAGAAGGTAGAGCGTAAAATGGCTGCAGTTGCAAGGGAAAGAGCATGGGCAGAAAGACTGGCTATGACAGGGGAATCAATACTCTTAAAATGCCAAAAGGCAAGAAAGTCATTAGAGAAAAGCTTAGTCCAGATTCAGGATATAGTTCCTGTTATGTTGGCTGGAGAGATTTCTCGAATAATTGATGATCTTAGGTGTGTGACCTTTGTCCTTGATTCTGCTGAAGAAGAGGCTGGAAGGGTTTTGAGAGAATTGCTCCAGCAAGGTCCTTCAACCTTGGATAACGATTCAAAAGAAAACTCAGATGTCAAATTTCTTCAGTTTGCGGCAGCAAGACTTAATATTACATCTGCGACATCCGtcataatagaaaaaagatCTATTGGGAAGTTACTACAAAAAGTTGGACCAgaagaggaaaataaaaagGCGATCTTGAAAAATCTGTTGTATCTTGTGAAAAAGTATGGAAACTTATTAAATACAGGAGAACAAGCGAAGGTCTATTCTCATCGTGAAGAACCAGTGGCAACTGAGAACTCTGGTCGTGATTCTTTACGCACCGATCATGTGAAGTTGGGGCCGTATTTGAACCATGATCAGTATGGAACACATCTCAGCCAGTCGAGCAGAGTTCCATCTCCACAGGAATACACTTGTCCGATATCTTTTAGATTGATGTATGATCCTGTTGTCATTGCTTCAGGAGAAACATACCAAAGGATGTGGATACAGAAATATTTTGATGAGGGTCATGTTATATGCCCGAAAACTAAAAAGAAACTGCCACATATGGCGATGACTCCTAACGTTGCTTTAAAGAAAGTAATATCAAACTGGTGCAAAACTAATGGAGTCTCGATTCCTAACCCAAGTAGGCAGGCAGAAGATATTCGGTTGTGGGAAGATTCCATCGCTTCCATTAGGAGTTTTGGAAGTTCCATGAATGGTTTGAACTTGCCAATGGATCTTGGTAACATTTCACTTGGATGTTAG 1419 0.4052 MRFGGVLRNILRPLSLSPARITVTSQISSTLPFHASLPSSCKPPQFLLPFLNHFHSLTDTRFPKRRPSDKPRRKRASLRPSGPYAWVQHTTGETILPNKPNEGSIKRRNEKKRMRQRRAFILAEKKKRKAQMQEAKRRKSIKKVERKMAAVARERAWAERLAMTGESILLKCQKARKSLEKSLVQIQDIVPVMLAGEISRIIDDLRCVTFVLDSAEEEAGRVLRELLQQGPSTLDNDSKENSDVKFLQFAAARLNITSATSVIIEKRSIGKLLQKVGPEEENKKAILKNLLYLVKKYGNLLNTGEQAKVYSHREEPVATENSGRDSLRTDHVKLGPYLNHDQYGTHLSQSSRVPSPQEYTCPISFRLMYDPVVIASGETYQRMWIQKYFDEGHVICPKTKKKLPHMAMTPNVALKKVISNWCKTNGVSIPNPSRQAEDIRLWEDSIASIRSFGSSMNGLNLPMDLGNISLGC 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00811 472 SUPERFAMILY RING/U-box 352 431 - -
Tsu01g00811 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 354 429 IPR013083 -
Tsu01g00811 472 MobiDBLite consensus disorder prediction 60 114 - -
Tsu01g00811 472 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 161 464 - -
Tsu01g00811 472 Pfam U-box domain 356 425 IPR003613 GO:0004842|GO:0016567
Tsu01g00811 472 ProSiteProfiles U-box domain profile. 354 428 IPR003613 GO:0004842|GO:0016567
Tsu01g00811 472 CDD RING-Ubox_PUB 361 401 IPR045210 -
Tsu01g00811 472 PANTHER U BOX DOMAIN-CONTAINING 161 464 - -
Tsu01g00811 472 SMART Ubox_2 358 421 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00811 Tsu-Chr1 7304788 7310182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00811 161 465 U-box Gene Family AT1G24330 35.987 2.69e-56 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00811 - - lja:Lj0g3v0300339.1 395.586