LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g00795	ATGTGGTTGCAAAAGAATCAATGGGACAAGAAGGATGGGGTGAATGGAATAGTGGCAGTGGCAATAGACACAGATAAAGGGAGCCAAAATGCACTTAAATGGGCCATTGATCATCTCATCTCAAAAGGCTCAACTATTGTTCTCATCCATGTCAACGTTAAACCAACATCATCATCTAATTCAACCCCAAGGGCAGGGATTGTTGAGCAATGCACAATGGTGCCCAAAGATCCTGATGAATTAACCAAAGAAATTTTTCGTCCATATCGCGTCTTTTGTGCGCGAAAAGATATACACTGCAAGGACATTGTACTAGAACATGGAGATGTATCCAAAGCATTAATTGAATATACTAATCAATCAGCAATTGAGCATTTGGTTATAGGCTCTTCCAACAAAAATGGTTTTCTCAAAAGATTCAAGGTGGTAGATATTCCGGGAACTGTATCTAAAGGTGCACCAGATTTTTGTACAGTATATATTGTTGGTAAAGGAAAAATTCAATCCATGAGATCTGCTTCTAGACCTGCACCTGCATTTTCACCTCTACAAACTCAACTTAATAAATCTAGTAGTAGTAAATCTAGTAGTAGATCAGAAATTTTGGAACCTCGCATGCCATTATTAGCAGCTAAAGCACCTGAGAGGAGATCGTTTGAGGGACCACCGCGTAGATCCCAAGATGGAGCAGATTCATTCAGGTCACCATTCACTCGGAGACGTCCAAATGACAAGTCATACGGAGAACTTCCTATGCCAGACAGTGACATATCCTTTGTAAGCTCAGGAAGACCGAGTACAGATCGTTTATTCCCTTCGATATATAACCACAACTACAATTCAGAGTCAAGTTTTTCCAATCCTAGGCTATCATATAGTTCTGATACGGATGGAAACTATAGCTTTGAATCAATAAATTATGGAAGGAGGTCCATTGATATTGGCACTCCTGATTTCTCAACTTTCTCACATGATAGTGATGGAGTCTCGTCTTCTACATCAAATGTGGATGATGTGGAGGCTGAAATGAGGAGACTGAAATTGGAGTTAAAGCAAACCATGGAAATGTATAGCACAGCTTGTAAAGAAGCACTCACAGCACAGCAGAAGGCTGTAGAACTCCAAAGATGGAAATTAGAGGAAGAAAGGAGGTTGGAGGAGGCAAGAACGGCTGAAGAAAATGCATTGGCTGTTGCAGAAAAGGAAAAGGCAAAATCAAAAGCAGCCATTGAGACTGCTGAAGCACAAAAGAGGATTGCAGAACTTGAAGCACAAAAGAGAATTAGTGCAGAAATGAAAGCTCTAAGAGAAGcagaagagaaaggaaaagtAGTTGATGCTTTTTCAAGCCAAGATGTGAGGTATAGAAGGTATGCAATTGAAGAGATTGAAGCTGCAACGAATTTTTTTACCGACTCTCTTAAGATTGGAGAAGGTGGTTACGGTCCAGTTTATAAATGTCTTCTAGACCATACACCTGTCGCGGTTAAAGTTCTTCGTCCTGATGCACAACAAGGAAGGTCGCAATTTCAACGAGAGGTTGAGGTATTGAGTTGCATAAGGCATCCAAACATGGTTCTTCTCCTAGGAGCCTGTCCAGAATACGGCTGCCTAGTTTACGAGCACATGGCGAATGGAAGTTTAGACGATTGTCTCTTTGGTAGAGGAAAAACTCCACCACTACCTTGGCAGCTAAGGTTCAAAATTGCAGCTGAAATTGGAACAGGCTtactcttcctccaccaaacaAAACCTGAGCCATTAGTACATAGAGACCTTAAACCTGCAAACATCTTGCTCGACCGCAACTACGTCGCAAAGATAAGTGATGTTGGTTTGGCAAGACTAGTACCTCCGTCAGTAGCAGACAATGTGACGCAATATCGAATGACGTCAGCTGCCGGAACATTCTGTTACATAGATCCTGAATACCAACAGACAGGAATGCTGGGAGTGAAATCTGATATATACTCACTTGGGATAATTTTCTTGCAAATTTTGACAGCGCGACAGCCGATGGGATTGACTCATCATGTTGGTAGAGCAATTGAGAAGGGAACATTTGATGAGATGTTGGATCCAAGAGTGACAGATTGGCCAGCTGAAGAGGCTCTTGGATTTGCTAAGATGGCTATACAATGTGCTGAGTTAAGGAGGAAAGATAGACCTGATCTTGGTAAAGAGATTATGCCTGAACTTAATAGGTTAAGAGAACTTGCTGAAATTAATGATAACCATTCTATATTTAGTGGATTTATTAGTCCATCTACTCAGAGCCAAGTCTCTCTTCAAATGGATGGATCAAGTTCTCCACTTCCTAATTCTGGGGATAGCACAAGAAATACATCAAGCCCTCTTTGA	2361	0.4053	MWLQKNQWDKKDGVNGIVAVAIDTDKGSQNALKWAIDHLISKGSTIVLIHVNVKPTSSSNSTPRAGIVEQCTMVPKDPDELTKEIFRPYRVFCARKDIHCKDIVLEHGDVSKALIEYTNQSAIEHLVIGSSNKNGFLKRFKVVDIPGTVSKGAPDFCTVYIVGKGKIQSMRSASRPAPAFSPLQTQLNKSSSSKSSSRSEILEPRMPLLAAKAPERRSFEGPPRRSQDGADSFRSPFTRRRPNDKSYGELPMPDSDISFVSSGRPSTDRLFPSIYNHNYNSESSFSNPRLSYSSDTDGNYSFESINYGRRSIDIGTPDFSTFSHDSDGVSSSTSNVDDVEAEMRRLKLELKQTMEMYSTACKEALTAQQKAVELQRWKLEEERRLEEARTAEENALAVAEKEKAKSKAAIETAEAQKRIAELEAQKRISAEMKALREAEEKGKVVDAFSSQDVRYRRYAIEEIEAATNFFTDSLKIGEGGYGPVYKCLLDHTPVAVKVLRPDAQQGRSQFQREVEVLSCIRHPNMVLLLGACPEYGCLVYEHMANGSLDDCLFGRGKTPPLPWQLRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNYVAKISDVGLARLVPPSVADNVTQYRMTSAAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQILTARQPMGLTHHVGRAIEKGTFDEMLDPRVTDWPAEEALGFAKMAIQCAELRRKDRPDLGKEIMPELNRLRELAEINDNHSIFSGFISPSTQSQVSLQMDGSSSPLPNSGDSTRNTSSPL	786

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g00795	786	Gene3D	HUPs	17	162	IPR014729	-
	Tsu01g00795	786	Coils	Coil	329	356	-	-
	Tsu01g00795	786	Coils	Coil	362	441	-	-
	Tsu01g00795	786	SUPERFAMILY	Protein kinase-like (PK-like)	453	725	IPR011009	-
	Tsu01g00795	786	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	18	140	-	-
	Tsu01g00795	786	MobiDBLite	consensus disorder prediction	174	200	-	-
	Tsu01g00795	786	MobiDBLite	consensus disorder prediction	759	786	-	-
	Tsu01g00795	786	Gene3D	Transferase(Phosphotransferase) domain 1	543	751	-	-
	Tsu01g00795	786	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	588	600	IPR008271	GO:0004672\|GO:0006468
	Tsu01g00795	786	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 34-LIKE	11	780	-	-
	Tsu01g00795	786	MobiDBLite	consensus disorder prediction	173	263	-	-
	Tsu01g00795	786	ProSiteProfiles	Protein kinase domain profile.	470	749	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g00795	786	PANTHER	OS02G0152300 PROTEIN	11	780	-	-
	Tsu01g00795	786	CDD	STK_N	17	165	-	-
	Tsu01g00795	786	Pfam	Universal stress protein family	18	139	IPR006016	-
	Tsu01g00795	786	Pfam	Protein kinase domain	472	678	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g00795	786	Gene3D	Phosphorylase Kinase; domain 1	448	542	-	-
	Tsu01g00795	786	SMART	serkin_6	470	730	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g00795	Tsu-Chr1	7174038	7178949	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g00795	1	763	Receptor kinase-like Gene Family	AT1G78940	56.743	0.0	806

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Tsu01g00795		Pkinase	2.9e-38	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g00795	-		-	gmx:100779981	1111.29