Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00790 ATGGCTGTGGAACTCATGGGGTTCCCAAAACTAGATGAACAAAAAGCCATACAAGAGGCTGCATCAGAAGGTCTTAAAGGTATGGAACACTTGATCCTAACCCTTTCGAATCAACCAACTCAATTAAACACACAATTAACTGATCACACCGTTTCTAAGTTCAAAAAACTCATTTCTTTACTTAACCGAACCGGTCATGCCCGGTTTAGACGCGCCCCGGTTCAAACCTCTTCATCACCACCGGTTCAAATCTTTTCATCACCGGTTCAACTTCAACCTTCTCTCCCTCCACCACAACCGAAACAGTTTCATTCTCCGCCACCGGCACTATCTCCGACGCCGATTTCAATACGTCACGCGCCGGCTACTTTTGTTCAACCTCAACCGCAATCACTATCACAATCACATAGTCTCACGCTTGATTTCACGAAACCGAACGACGTCGTTTTGAGTTCAAACGCGAAAAATAACTCTATGGTGGAACTTGAATTCTCGAAGGATACAGCGACGTTTAGTGTTTCTTCAACTTCGTCGTTTATGTCATCTGCTATTACCGGTGATGGTAGCGTTAACGGTAAGCAAGGATCGTCGATTTTTCTTACTCCGGCGGCAACACCAGCTATCTCCGGTGGAAAACCACCGCTTTTGTCTGGACCGTCTAAGAAACGGTGTCATGATCATGGTGAACACTCCGAGGACGTTTCAGGATCAAATAAGTGTCACTGTGTTAAGAGAAGaaaaaatagGGTGAAGAGAACTGTGAGAGTACCGGCAATAAGTTCAAAAACCGCCGATATACCAGCCGATGAATACTCGTGGAGAAAATACGGTCAAAAACCAATCAAAGGATCACCATATCCACGTGGCTATTACAAGTGTAGCACAGTGAGAGGGTGCCCAGCAAGGAAACACGTGGAACGTGCACCAGATGATCCAACGATGCTGATTGTAACATATGAAGGGGAACACAGACACGCAATTCAAGCCGCGATGCAGGAGAATGCAGCCGGGATTGTGGGTTTGGTATTTGAGTCAACGTAA 1041 0.4563 MAVELMGFPKLDEQKAIQEAASEGLKGMEHLILTLSNQPTQLNTQLTDHTVSKFKKLISLLNRTGHARFRRAPVQTSSSPPVQIFSSPVQLQPSLPPPQPKQFHSPPPALSPTPISIRHAPATFVQPQPQSLSQSHSLTLDFTKPNDVVLSSNAKNNSMVELEFSKDTATFSVSSTSSFMSSAITGDGSVNGKQGSSIFLTPAATPAISGGKPPLLSGPSKKRCHDHGEHSEDVSGSNKCHCVKRRKNRVKRTVRVPAISSKTADIPADEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAPDDPTMLIVTYEGEHRHAIQAAMQENAAGIVGLVFEST 346
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00790 346 SMART WRKY_cls 267 327 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu01g00790 346 MobiDBLite consensus disorder prediction 91 114 - -
Tsu01g00790 346 MobiDBLite consensus disorder prediction 69 115 - -
Tsu01g00790 346 MobiDBLite consensus disorder prediction 209 237 - -
Tsu01g00790 346 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 12 344 IPR044810 GO:0003700
Tsu01g00790 346 PANTHER WRKY PROTEIN 12 344 - -
Tsu01g00790 346 Pfam Plant zinc cluster domain 221 265 IPR018872 -
Tsu01g00790 346 MobiDBLite consensus disorder prediction 71 90 - -
Tsu01g00790 346 ProSiteProfiles WRKY domain profile. 262 328 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu01g00790 346 MobiDBLite consensus disorder prediction 219 237 - -
Tsu01g00790 346 Pfam WRKY DNA -binding domain 269 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu01g00790 346 Gene3D WRKY domain 250 327 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu01g00790 346 SUPERFAMILY WRKY DNA-binding domain 263 327 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu01g00790 Tsu-Chr1 7078092 7081264 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00790 1 345 WRKY Transcription Factor Family AT2G24570 55.618 5.38e-113 329
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu01g00790 WRKY 8.1e-26 CL0274
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00790 - - cam:101509842 500.745