Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00785 ATGATGGATGAAAATCCTAGTAAAAAAGGCACTGATGGGATGGTAGCCCCTAGAAAAAGGATAAGCGTTGTGTTTAGAGACACTGCTAATACCAGAAATCGAAATGATCAAATTTGCAGCCGAGTGGGTTGCAGTAGTACAGCCAACCCTCCTAAGGTTGCTCAAGTCAAATCTTCCGAAAAAGTTAAATCTTCAAGGCCATCAATGCAGTCAACTTCAAGTGGCAAGGAGGTAATTGGTAGTTCCCGTAGAACAGCTACTAACCCAGCTAAACCGCTTACAAAGCCTCGGAGAACATTAACATCAAGTGCGCTTCAAGCTGATGAGGAAGGTAAAAAGTCTACTAATGTAACTTTGACAGAAGTAAGAAAATCTAGCGGGGTATCAAATTTACCATCTCAAAGGAATTTTAATCAAAGACCTGGATTTCGTCAACAAGAAAATGAAAGCAAGGGTCCGGTGAAACAAGCTGTTTCTAGCAGCAAGTATGGATTGAGGAACCTCAGATGCAATACTATATCTGATATCATCCCTTCTTCTTGCTCATCGTCATCATCAGATTCTACTCTTAATAGAAAGAAGGCTGTGATAAAAAAGAGAAACACTGGAGAGGAAAGTAGCTTAACTGTGAAAGGGAAGAAGATGACCGGGTCGTCATTGGAAAGATTGAATTCTGGCTCCAGAAATGGAATATCTATATCTGAAGCAAGAGGACCTAGAAATATTCCTCCTCGTAAAGACAACAGCAGAGCAACAGTTAGACCTGAAAGATCGGTTAGTCGTTATGCCAGGGGAAGATTGTCTAGCCAAGGAAATGAAAACCCCACGGAAACCAATGAGCCCCATGTTGAGTTACCTAGTTCGCCTCATTGTATTGATCTTAATTCTCCTGTCATTGAAGAGTTATCTGATACTATGCCTATGTCTCCTGAAGAATATGACATATCTCATTCTGTAATAAATCGGAATGGATTACGGCGTTACGATATGGACATTATTTCCGAGGTATTATTGGCACTAGAGAGAATTGAGCAAAATGAAGAGTTAACCCATGAGCAAATTCGTTTACTAGAGACCAACTCGTTACTTAACGGGCTTGGCTTATATGATCGTCATAGAGACATGCGACTGGATATTGATGACATGTCATACGAGGAACTCTTAGATCTTGAAGAGAGAATGGGTACCGTGAGCACAGCTCTAACAGAGGAAGCACTCTCAGATAGTCTTAGAAGAAGTATCTATCAGTCTGCGCCTTCCGATGATGCATCCAACTGTGTTAATGAGGATAAGGGTAATATCAAATGCTGCATTTGCCAGGTATTTTTTAACAGTTATTGA 1341 0.4072 MMDENPSKKGTDGMVAPRKRISVVFRDTANTRNRNDQICSRVGCSSTANPPKVAQVKSSEKVKSSRPSMQSTSSGKEVIGSSRRTATNPAKPLTKPRRTLTSSALQADEEGKKSTNVTLTEVRKSSGVSNLPSQRNFNQRPGFRQQENESKGPVKQAVSSSKYGLRNLRCNTISDIIPSSCSSSSSDSTLNRKKAVIKKRNTGEESSLTVKGKKMTGSSLERLNSGSRNGISISEARGPRNIPPRKDNSRATVRPERSVSRYARGRLSSQGNENPTETNEPHVELPSSPHCIDLNSPVIEELSDTMPMSPEEYDISHSVINRNGLRRYDMDIISEVLLALERIEQNEELTHEQIRLLETNSLLNGLGLYDRHRDMRLDIDDMSYEELLDLEERMGTVSTALTEEALSDSLRRSIYQSAPSDDASNCVNEDKGNIKCCICQVFFNSY 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00785 446 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 101 443 IPR045191 GO:0061630
Tsu01g00785 446 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 94 IPR045191 GO:0061630
Tsu01g00785 446 MobiDBLite consensus disorder prediction 176 289 - -
Tsu01g00785 446 MobiDBLite consensus disorder prediction 41 161 - -
Tsu01g00785 446 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 101 443 - -
Tsu01g00785 446 MobiDBLite consensus disorder prediction 1 20 - -
Tsu01g00785 446 MobiDBLite consensus disorder prediction 176 191 - -
Tsu01g00785 446 MobiDBLite consensus disorder prediction 208 234 - -
Tsu01g00785 446 MobiDBLite consensus disorder prediction 192 207 - -
Tsu01g00785 446 MobiDBLite consensus disorder prediction 240 261 - -
Tsu01g00785 446 Coils Coil 340 360 - -
Tsu01g00785 446 MobiDBLite consensus disorder prediction 263 283 - -
Tsu01g00785 446 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 2 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00785 Tsu-Chr1 7029254 7033264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00785 332 440 C3H Transcription Factor Family AT2G15530 40.000 6.32e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00785 - - mtr:MTR_1g009680 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00785 01 7029254 7033264 Tsu07g00544 07 4242892 4246724 PCT