Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00780 atgagttctCTCAACTTCCTCACTTTCCTTGTTAACCTCTTTCTTTTGCAGCTCATAGCAAGTTCTTATGCAACAAAACTTAGAGTTGACTATTACAAAAAAACATGTCCAAATGTTGAATCAATAGTCCACAATGCAGTTGAGATGAAACTTCAGCAAACATTTGTAACAGCTTCTGGTACACTTAGGCTTTTCTTCCATGATTGTTTTGTTCAGGGATGTGATGCTTCTGTGTTGTTAGCTTCAAGAAACAGTACTTCAGAAAAAGATAATGATATTAATCTTTCACTGGCTGGTGATGGTTTTGACACAGTGATCAAAGCAAAAGCTGCAGTTGACAGTGTTCCTGGCTGCCGAAACAAGGTTTCGTGTGCTGACATTTTGGCATTGGCAACTAGGGATGTCATAAAATTGACAGGAGGGCCATCTTATGCAGTAGAGTTGGGAAGACTAGATGGAAGAATCTCGACAAAAGACAGTGTCACAAACCGTCTACCTCATCCTGAATTCAAACTAGCAACGCTAACCAGAATGTTTGCTTCGCATGGCCTCACTCTAACCGATCTAATTGCTCTATCAGGAGCGCATACTATTGGATTCTCTCATTGTAACCAATTCTCGAAACGAATTTACAACTTCAAAAGTGGGAAGATAATTGATCCATCACTTAATCCTCAATATGCAAAACAGCTCCAACAAATTTGTCCAAAAGATGTGGACCCTAGACTTGCCGTTGATATGGATCCTTTTACGCCTAGGACATTTGATAACCATTACTACAAGAATCTTCAACAAGGAATAGGACTACTCTCTTCTGATCAAGCTTTGTTTACTCATAAAAGTTCAAGAAACTTAGTGAACTTGTTTGCATCAAATAACACAGCCTTTGAAAAAGCCTTTGTTATTGCTATAACAAAGCTTGGCCGAGTCGGAGTCAAAACTGGAAGGCAGGGCGAAATCAGGCATGATTGCACGATGATTAACTGA 987 0.3911 MSSLNFLTFLVNLFLLQLIASSYATKLRVDYYKKTCPNVESIVHNAVEMKLQQTFVTASGTLRLFFHDCFVQGCDASVLLASRNSTSEKDNDINLSLAGDGFDTVIKAKAAVDSVPGCRNKVSCADILALATRDVIKLTGGPSYAVELGRLDGRISTKDSVTNRLPHPEFKLATLTRMFASHGLTLTDLIALSGAHTIGFSHCNQFSKRIYNFKSGKIIDPSLNPQYAKQLQQICPKDVDPRLAVDMDPFTPRTFDNHYYKNLQQGIGLLSSDQALFTHKSSRNLVNLFASNNTAFEKAFVIAITKLGRVGVKTGRQGEIRHDCTMIN 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00780 328 CDD secretory_peroxidase 26 324 IPR033905 GO:0004601|GO:0042744
Tsu01g00780 328 Gene3D Peroxidase, domain 2 166 307 - -
Tsu01g00780 328 Gene3D - 30 328 - -
Tsu01g00780 328 PANTHER - 1 328 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu01g00780 328 PRINTS Plant peroxidase signature 262 279 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu01g00780 328 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu01g00780 328 PRINTS Plant peroxidase signature 140 155 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu01g00780 328 PRINTS Plant peroxidase signature 246 261 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu01g00780 328 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu01g00780 328 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu01g00780 328 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu01g00780 328 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu01g00780 328 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601|GO:0006979|GO:0020037
Tsu01g00780 328 ProSiteProfiles Plant heme peroxidase family profile. 26 328 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu01g00780 328 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Tsu01g00780 328 ProSitePatterns Peroxidases proximal heme-ligand signature. 188 198 IPR019793 -
Tsu01g00780 328 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu01g00780 328 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu01g00780 328 PRINTS Haem peroxidase superfamily signature 140 152 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu01g00780 328 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu01g00780 328 PRINTS Haem peroxidase superfamily signature 248 263 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu01g00780 328 Pfam Peroxidase 57 292 IPR002016 GO:0004601|GO:0006979|GO:0020037
Tsu01g00780 328 PANTHER PEROXIDASE 1 328 - -
Tsu01g00780 328 SUPERFAMILY Heme-dependent peroxidases 27 328 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00780 Tsu-Chr1 6988029 6989826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00780 8 328 Peroxidase AT2G18980 63.863 2.42e-150 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00780 K00430 - gmx:100793327 526.168