Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00778 ATGTCAGGATTAACATGCAATTCTTGCAACACTGAATTCAAAGACGATTCCGATCAAAAACTTCATTACAAATCCGAATGGCATCGCTACAATCTCAAACGCAAGGTGGCTGGGGTTCCTGGAGTGACCGAAGCATTGTTTCTAGCTAGACAAGCTGCTCTGGCTCAAGAGAGAGATAAGTCTAATGAAAGCCCTATGCTCTATAGCTGTGGCCTATGTGGCAAGGGGTACAAAAGTGAAAAGGCTCATGCCGAGCATCTTAAGTCGAGAACTCATATGATGAAGGCTTCTGAAGGAGCTAGTGATTCAGATGGGAAGGCTATAATTAAGCCACTTCCACAACGTGTTGTGAATAAGCCTCCTCCTAGAAGACTGGTAGATGTCTCtgctgatgatgatgaagaaagtgaagatgaatGGGTAGAGgttgattctgatgatgatcTGCTTGATGATGCTGAAAAGTCCTTGACAGATTTGAATATGGACGAGAATGCTGATAATGATGATATGGACGAAGATGATGTTGTGGACTTAGATCCATCGTGTTGCTTTATGTGTGATAAAGAGCACAAAACATTAGAAAACTGCATGGTTCACATGCACAAGCACCATGGGTTCTTTATTCCAGATGTCGAGTATTTGAAAGATCCAAAAGGGCTCCTCACCTATCTTGGACTAAAGGTCAAAAGGGACTACTTGTGTCTGTACTGCAACGATCGGTGTCATCCTTTCAGCAGCTTGGAAGCAGTCAGGCAACATATGGCAGCAAAAAATCACTGTAAAGTGCATTATGGcgacgatgatgatgaggaGGAAGTAGAGTTGGAAGAATTCTATGATTATACTAGCAGTTATGTTGATGAGCAAGGGAAGCAGCTAGTTGTATCCGGTGGTGCTGATAACAATATAGAACTTAGCGATGGGTCTGAGCTCGTGATAACTAAGCTATCTGGTAACAAAAAATCAACCAGAACTCTAGGTTCCCGCGAATACCTGCGTTATTATCGTCAGAAACCACGGCCATCACCAGCAAATAACATTGCCGTTACTGCGGAATTGGCTGCAAGGTTTGCCATTTTAATAAAACCCATACTTATTTCCTGTGTAATGCTGTGGTGA 1122 0.4029 MSGLTCNSCNTEFKDDSDQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQAALAQERDKSNESPMLYSCGLCGKGYKSEKAHAEHLKSRTHMMKASEGASDSDGKAIIKPLPQRVVNKPPPRRLVDVSADDDEESEDEWVEVDSDDDLLDDAEKSLTDLNMDENADNDDMDEDDVVDLDPSCCFMCDKEHKTLENCMVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYLCLYCNDRCHPFSSLEAVRQHMAAKNHCKVHYGDDDDEEEVELEEFYDYTSSYVDEQGKQLVVSGGADNNIELSDGSELVITKLSGNKKSTRTLGSREYLRYYRQKPRPSPANNIAVTAELAARFAILIKPILISCVMLW 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00778 373 SUPERFAMILY beta-beta-alpha zinc fingers 58 97 IPR036236 -
Tsu01g00778 373 SUPERFAMILY beta-beta-alpha zinc fingers 167 243 IPR036236 -
Tsu01g00778 373 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Tsu01g00778 373 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Tsu01g00778 373 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Tsu01g00778 373 MobiDBLite consensus disorder prediction 84 148 - -
Tsu01g00778 373 SUPERFAMILY beta-beta-alpha zinc fingers 4 36 IPR036236 -
Tsu01g00778 373 MobiDBLite consensus disorder prediction 84 99 - -
Tsu01g00778 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 97 IPR013087 -
Tsu01g00778 373 MobiDBLite consensus disorder prediction 131 148 - -
Tsu01g00778 373 Pfam C2H2 type zinc-finger (2 copies) 184 285 IPR041661 -
Tsu01g00778 373 PANTHER ZINC FINGER PROTEIN 622 1 359 IPR040025 -
Tsu01g00778 373 PANTHER ZINC FINGER PROTEIN-RELATED 1 359 - -
Tsu01g00778 373 SMART c2h2final6 68 92 IPR013087 -
Tsu01g00778 373 SMART c2h2final6 182 204 IPR013087 -
Tsu01g00778 373 SMART c2h2final6 4 28 IPR013087 -
Tsu01g00778 373 SMART c2h2final6 233 260 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00778 1 361 C2H2 Transcription Factor Family AT4G31420 63.315 1.07e-161 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00778 K14816 - gmx:100796317 515.383