Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00773 ATGTTCTCCAGTTCTCAATTCGATGCTTCCAACGCCTTCTCTGGCGGTGGATTCATGTCATCGCAACCTAACGATTCTTCTCCGGCACCGACTAAAAACCGCGACTCTCAGGGTTTGGTTCCGGTTACGGTGAAGCAGATAAGTGAAGCTTCTCATTCTGGTGATGAAAAGTCCAATTTCTCCATCAACGGTGTAGATCTGACAAATGTGACTTTGGTTGGAATAGTGCATGAGAAAGCTGAGAGGAACACtgatgttaattttgttttggatgATGGAACCGGAAGAATCACTTGTCGAAGATGGATTAATGAGACTTTTGACACGAAGGAAATGGAGGAAGTATTGAATGGAAAGTATGTTCGTGTTTATGGACACTTGAAAAGCTTTCAAGGTGTAAGGCAACTTACTGCCTTCTCTGTCAGGCCTGTGACAAATTTTGATGAAATCCCATTTCACTTTATCGATTGCATACATAACCACCTCTGCACCAAAGTAAAGATGGAAGGAGGAATCCCTTCTACATTTCCTCCATCAAACTCGTCTATGACCACTCCTGTCAAAAGTGCATTGAATGGATCTCCGGCACCACCATCAAATTCGGGATATGCACAATATAGCACTGATGGACTCAAGGATATTGATAAACTGGTGATTGACTATCTTCAGCAGCATTCAGACATgTCAGATGAAAGGGGAATACATGTTAATGACCTATCAAAAGAGCTCAGGCTTCCATTGGAGAAGATCATGTTGTCGCTAAAGACTCTTGGAGATGATGGTTTGGTATACTCCACCATTGATGATTTCCACTACAAACAAGCTTAA 828 0.413 MFSSSQFDASNAFSGGGFMSSQPNDSSPAPTKNRDSQGLVPVTVKQISEASHSGDEKSNFSINGVDLTNVTLVGIVHEKAERNTDVNFVLDDGTGRITCRRWINETFDTKEMEEVLNGKYVRVYGHLKSFQGVRQLTAFSVRPVTNFDEIPFHFIDCIHNHLCTKVKMEGGIPSTFPPSNSSMTTPVKSALNGSPAPPSNSGYAQYSTDGLKDIDKLVIDYLQQHSDMSDERGIHVNDLSKELRLPLEKIMLSLKTLGDDGLVYSTIDDFHYKQA 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00773 275 CDD RPA2_DBD_D 69 162 - -
Tsu01g00773 275 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 1 275 - -
Tsu01g00773 275 Pfam Replication protein A C terminal 183 269 IPR014892 -
Tsu01g00773 275 Gene3D - 31 165 IPR012340 -
Tsu01g00773 275 Pfam OB-fold nucleic acid binding domain 70 142 IPR004365 GO:0003676
Tsu01g00773 275 SUPERFAMILY "Winged helix" DNA-binding domain 209 273 IPR036390 -
Tsu01g00773 275 PANTHER REPLICATION PROTEIN A-RELATED 1 275 IPR040260 -
Tsu01g00773 275 SUPERFAMILY Nucleic acid-binding proteins 39 163 IPR012340 -
Tsu01g00773 275 MobiDBLite consensus disorder prediction 1 38 - -
Tsu01g00773 275 MobiDBLite consensus disorder prediction 174 204 - -
Tsu01g00773 275 PIRSF RPA32 1 275 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu01g00773 275 Gene3D - 205 275 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00773 Tsu-Chr1 6892316 6896897 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00773 1 273 Core DNA Replication Machinery Family AT2G24490 46.619 8.37e-88 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00773 K10739 - gmx:100802512 429.869