Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00749 ATGGGTGAGGTGGCAGTGTTGCACTCTGAACCTCTGCACTTTGAATGCAATGACACAAAACATATGATAGAAGAAGACGCTTATCCTCCAAAATCAAATCTGGAATCCTTTCCTGGAGAAGAATCAAGTCAATctataaacaaaaatgatttgCAAGATAAAGGATATATGGAATATGGATGCCAACATTACCGTAGAAGATGCCGAATCAGGGCCCCCTGTTGCAATGAGATTTTTGATTGCCGCCATTGTCACAATGAGGCGAAAAATGATATCAATGTAGATTATAAGCATAGACACGATATGCCCCGACACCAAGTCAAACAGGTGATATGTTCACTTTGTGGGACTGAACAAGAGGTTCAGCAAAACTGTATTAATTGTGGTGTTTGCATGGGCAAGTACTTCTGTGAGACATGCAAGCtctatgatgatgatATATCTAAGCAGCAGTACCATTGTAATGGCTGTGGAATTTGCAGAACTGGTGGACAGGAGAATTTCTTCCATTGTAATAAGTGTGGTTGTTGCTACTCGACTCTGCTGAAAAACAGTCACCCCTGTGTGGAAGGAGCAATGCATCATGATTGCCCTGTTTGTTTTGAGTATTTGTTTGAATCAAGAAATGATGTCATTGTTATGCCATGTGGACATACAATCCATAAAAGCTGTCTGAATGAAATGAGAGAACATTACCAATACGCATGCCCTCTCTGTTCGAAGTCAGTCTGTGATATGTCAAAGGTTTGGGAGAAATTGGACATGGAGATTGCTGCTACGCCAATGCCTGAAccatatcaaaataaaatgGTTTGGATCCTGTGCAATGACTGCGGACAAACTTCTCACGTCCAGTTCCATTTTGTTGCTCAAAAATGCCTCAACTGCAAATCCTATAACACACGACAGACGAGAGGCTGA 921 0.3985 MGEVAVLHSEPLHFECNDTKHMIEEDAYPPKSNLESFPGEESSQSINKNDLQDKGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINVDYKHRHDMPRHQVKQVICSLCGTEQEVQQNCINCGVCMGKYFCETCKLYDDDISKQQYHCNGCGICRTGGQENFFHCNKCGCCYSTLLKNSHPCVEGAMHHDCPVCFEYLFESRNDVIVMPCGHTIHKSCLNEMREHYQYACPLCSKSVCDMSKVWEKLDMEIAATPMPEPYQNKMVWILCNDCGQTSHVQFHFVAQKCLNCKSYNTRQTRG 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00749 306 CDD RING-H2_Pirh2 196 240 - -
Tsu01g00749 306 Pfam CHY zinc finger 61 142 IPR008913 GO:0008270
Tsu01g00749 306 ProSiteProfiles Zinc finger CTCHY-type profile. 132 196 IPR017921 -
Tsu01g00749 306 Pfam Ring finger domain 196 239 IPR001841 -
Tsu01g00749 306 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 30 306 - -
Tsu01g00749 306 SUPERFAMILY CHY zinc finger-like 58 132 IPR037274 GO:0008270
Tsu01g00749 306 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 30 306 - -
Tsu01g00749 306 MobiDBLite consensus disorder prediction 29 49 - -
Tsu01g00749 306 Pfam Zinc-ribbon 244 302 IPR039512 -
Tsu01g00749 306 SUPERFAMILY Zinc hairpin stack 133 190 IPR037275 -
Tsu01g00749 306 Gene3D - 268 306 - -
Tsu01g00749 306 SMART ring_2 197 239 IPR001841 -
Tsu01g00749 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 259 IPR013083 -
Tsu01g00749 306 ProSiteProfiles Zinc finger RING-type profile. 197 240 IPR001841 -
Tsu01g00749 306 SUPERFAMILY RING/U-box 196 244 - -
Tsu01g00749 306 ProSiteProfiles Zinc finger CHY-type profile. 54 130 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00749 Tsu-Chr1 6694244 6697376 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00749 59 306 C2H2 Transcription Factor Family AT3G18290 39.130 3.55e-53 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00749 K10144 - gmx:100803569 609.757