Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00747 ATGCATCCATTAATAATGGTTGCTGAATTATTATTCCTGTTGGTAGAAGCAGTTGCAGTTGCAGTTGCATCTGATCAACCCAAACAAGTCCTACCAGGCTGCAACTACACTTGTGGAGATGTACAAATTCCATATCCATTTGGCATAGGAAATTCAACAACACAATATCATACACCATGTTACATGGATTCTAAATTTGAGCTTACTTGTAGAAACTCAAAATTATATCATGATAAAATTATCCCAGTCCTAGACATAAATGCCAAAAGTCAAATGGTAATGAAATTTTTCGTCTCACATCTTTGTACTAATTATAGTAATGGTAGTAGTACtaatagtagtagtattaaTTTCCCAGAAGCCAATAAACCTCTTATCAAAGTTTCTTCTTTCACAATTTCAAGAACGGAAAACAAATTCATAACCGTAGGTTGCGACAGTTATGGATATATCAACAGTAATTTCAAGGGTGCAACTTATTCAACAGGGTGCTTAACAAGATGTCATAATTATGATCCTAAAATGATAATTGGGAATAACACCGGAAAATGCACAGGTTTAGGGTGTTGCCAAGTAGATATTCCTCCACTTATGAAAAACATCACTATACAAACATTTAAATTCCTAACTTCTACATCTCAGAAAAGTTGTAGCTATTCCTTTATTGCAAAACAAGGATCCTACAATTTTTCTGTAGAGCATATAAATGATCTACCTAATCAAACTTTTCCCGTGGTTGTTAATTGGGCCGTTACAAATGAATCATGTCAAATAGCACAAACTACGGATAGCTATGCCTGCAAGGAAAATAGTGAATGCGTCGATAATGATCCAGATTATGACGGTTACAGATGCAAGTGTTTGGAAGGTTTTGAAGGAAATCCATACCTTCCAGGAGGCTGCAGAGACATTGATGAATGTGCAAAAAATTTACATGGATGCAAACATAGCGCAAATTGTATCAACATGGCCGGGAATTACACTTGTTTCTGTCCTGTGGGCCAAACCGGAGATGGAACAAAGGAGGGAGGGTGCCAACTAGCTGATGGAAATGCATATTCAACTGTCCTAAGTAGCGGAAGTTTTGGTACAGTTTTCAAAGGGGAACTTGAAGATAATAGAATTGTTGCTATAAAAATGTCCAAAATAATAGATGAAAGCCAAATTGAGCAATTCATTAATGAGGTGGATGTTGTCTCCCAAATAAATCACAGGAATGTGGTTAAACTCTTGGGGTGTTGTCTAGAAACAGAAGTTCCTTTGCTGGTTTATGAATTCGTTAGCAATGGTACTCTTTCTGATTTTATACACAAAGATAACGTGAATAATCCAACTTGGAAAATTCGTCTTAAGATAGCAACAGAGGTAGCTGGAGCTTTGTCATATCTACACTCAGCTGCTTCAATACCAATTATCCACAGAGATGTCAAGAGTGCTAACATTCTCTTAGATGGAACCAACACTGCAAAAGTATCTGATTTTGGAGCTTCAAAATTAGTACCACTTGACCAATCTGGAATAGCCACAATGGTGCAAGGAACTATTGGATACTTAGATCCAGAGTATATGCTAACAAACCAATTGACTGAAAAAAGTGATGTATATAGTTTTGGGGTAGTTGTTGTGGAGCTGCTAACAGGGGAGAGACCTTTTAGTTTTGGCAGAATTCGATGTGTCAATGGTATTATCTGGGATCCTTTACTTTGA 1707 0.3656 MHPLIMVAELLFLLVEAVAVAVASDQPKQVLPGCNYTCGDVQIPYPFGIGNSTTQYHTPCYMDSKFELTCRNSKLYHDKIIPVLDINAKSQMVMKFFVSHLCTNYSNGSSTNSSSINFPEANKPLIKVSSFTISRTENKFITVGCDSYGYINSNFKGATYSTGCLTRCHNYDPKMIIGNNTGKCTGLGCCQVDIPPLMKNITIQTFKFLTSTSQKSCSYSFIAKQGSYNFSVEHINDLPNQTFPVVVNWAVTNESCQIAQTTDSYACKENSECVDNDPDYDGYRCKCLEGFEGNPYLPGGCRDIDECAKNLHGCKHSANCINMAGNYTCFCPVGQTGDGTKEGGCQLADGNAYSTVLSSGSFGTVFKGELEDNRIVAIKMSKIIDESQIEQFINEVDVVSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSDFIHKDNVNNPTWKIRLKIATEVAGALSYLHSAASIPIIHRDVKSANILLDGTNTAKVSDFGASKLVPLDQSGIATMVQGTIGYLDPEYMLTNQLTEKSDVYSFGVVVVELLTGERPFSFGRIRCVNGIIWDPLL 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00747 568 Gene3D Laminin 245 297 - -
Tsu01g00747 568 ProSiteProfiles EGF-like domain profile. 303 341 IPR000742 -
Tsu01g00747 568 SMART egf_5 255 302 IPR000742 -
Tsu01g00747 568 SMART egf_5 306 346 IPR000742 -
Tsu01g00747 568 SUPERFAMILY EGF/Laminin 303 338 - -
Tsu01g00747 568 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 320 331 IPR000152 -
Tsu01g00747 568 SMART egfca_6 303 346 IPR001881 GO:0005509
Tsu01g00747 568 ProSitePatterns Serine/Threonine protein kinases active-site signature. 471 483 IPR008271 GO:0004672|GO:0006468
Tsu01g00747 568 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 14 346 - -
Tsu01g00747 568 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 354 556 - -
Tsu01g00747 568 SMART serkin_6 351 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00747 568 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 14 346 IPR045274 GO:0007166
Tsu01g00747 568 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 354 556 IPR045274 GO:0007166
Tsu01g00747 568 SUPERFAMILY Protein kinase-like (PK-like) 353 554 IPR011009 -
Tsu01g00747 568 Pfam Wall-associated receptor kinase galacturonan-binding 34 92 IPR025287 GO:0030247
Tsu01g00747 568 Gene3D Transferase(Phosphotransferase) domain 1 348 560 - -
Tsu01g00747 568 ProSitePatterns Calcium-binding EGF-like domain signature. 303 329 IPR018097 GO:0005509
Tsu01g00747 568 Gene3D Laminin 300 342 - -
Tsu01g00747 568 ProSiteProfiles Protein kinase domain profile. 351 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00747 568 Pfam Calcium-binding EGF domain 303 340 IPR001881 GO:0005509
Tsu01g00747 568 Pfam Protein tyrosine and serine/threonine kinase 355 551 IPR001245 GO:0004672|GO:0006468
Tsu01g00747 568 CDD EGF_CA 303 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00747 Tsu-Chr1 6682560 6686171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00747 10 555 Receptor kinase-like Gene Family AT1G16260 37.500 1.14e-110 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Tsu01g00747 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00747 - - mtr:MTR_1g010250 760.37