Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00741 ATGTCTCAAACTAACTGGGAAGCTGATAAGATGTTGGATGTTTACATCCATGATTACCTAGTGAAGAGGGATTTGAAGGCTTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTGTCCTCTGATCCTGTTGCTATTGATGCCCCGGGAGGATTTTTGTTTGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCTAGGACAAACGAGAAACATTCGGAAGTTGCCGCGTCTTATATCGAGACACAGTTAATTAAGGCTAGGGagcaacaacagcagcagcaacaacaacagcagcagcagccaCAACCTCAGCAGTCACAGCAACatcaacagcagcagcagcaacaacaacagcagATGCAGATGCAACAGATGCTGTTACAGAGGCAGCATCAGCagcaacaacagcagcagcagcagcagcagcaacaacagcagcagcagcatcagcaacaacaacagcagcagccgcagcatcagcaacaacagcagcaacagcagcagcaacaacaacaggGTAGGGATAGGGCTCATCTCTTGAACGGCGGTGGTGCAAATGGGTTAGTTGGAAACCCTAGCACTGCAAATGCAATAGCAACAAAGATGTACGAGGAAAGGTTAAAAATTCCCCTTCAAAGAGATTCTTTGGAAGATGCTGCGATGAAGCAAAGATTTGGTGACCAACTCATGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCTGCTCCTGGCCAGCCATCAGGGCAAGTTTTGCATGGTTCTGCTGGTGCGATGTCGCCACAAGTTCAAGCTCGTAGTCAGCAACTACCAGGCTCTACTCCGGATATAAAAAGTGAGATTAATCCTGTTTTAAACCCCAGAGCTGCGGGTCCTGAAGGATCGTTGATGGCAATTCCTGGATCAAATCAAGGTGGCAACAATTTGACCCTGAAAGGGTGGCCACTCACAGGGTTGGAGCAACTTCGTTCTGGCTTACTCCAGCAACAAAAACCTTTCATACAGTCTCCACAGCCTTTTCATCAACTTCCAATGTTGACAGCACAACATCAGCAACAGCTTATGTTGGCACAACAAAACCTGGCATCACCATCTGCCAGTGATGATAGTAGAAGACTCAGAATGCTATTGAATACTAGGAATATGGGCGTAGGTAAGGATGGCCTTCCAAATCCTGTTGGTGATGTAGTATCAAATGTTGGATCACCCCTTCAAGCAGGTGGTCCTCCTTTTCCTCGTGGTGATACGGATATGCTAATGAAGTTGAAACTGGCTCAGTTACAACATCAACAACAGCAAAATGCCAATCCACAGCAGCAGCAACTTCAACAACATAATCTTTCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAAGATAAAGTAGGTGGAGGTGGAGGTGGAGGTGGTGGCAGTGTCACTGGAGATGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCAAAAAACCAGACtggaggaagaaagagaaagcaGCCTGTATCTTCTTCCGGTCCTGCCAATAGCTCAGGAACAGCCAATACAGCAGGACCATCTCCGAGTTCAGCACCCTCAACTCCCTCAGGTTCAACTCATACACCAGGCGATGTGATATCAATGCCTTCTTCTATACCTCATAATGGTAGTTCTTCTAAGCCATTAATGATGTTTGGTACTGATGGCACCGGAACTCTTACCTCACCTTCAAATCAATTGTGGGATGATAAGGATATTGAATTGCAGGCAGATGTGGACCGCTTTGTTGAGGATGGATCACTTGATGACAATGtggagtcttttttatcgcatgATGATACAGACCATAGAGATCCAGTTGGACGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAGTAAATTCGGTTCGTGCAAGCACAAGCAAAGTTGTTTGTACCCATTTCTCATCCGACGGAAAATTGCTTGCAAGTGGTGGCCACGACAAAAAGGCTGTTTTATGGTACACAGATTCTCTAAAGCAGAAAGCTACTCTTGAAGAGCATTCATCGTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATATGACAAAACTGTCCGGGTTTGGGACGTTGACAATCCTGGATATTCGCTCCGTACCTTCACTGGCCATTCTGCATCTGTTATGTCACTGGACTTTCACCCTAATAAAGATGACCTTATCTGCTCTTGTGATTTTGACGGCGAGATAAGATATTGGAGTATTAACAACGGCAGTTGTGCTAGAGTGTCAAAGGGTGGCACTGCACAGATGAGATTTCAACCTCGGCTAGGGAGATTCCTTGCTGCAGCTGCAGAGAACGTTGTCTCTATACTTGATGTCGAGACACAAGCATGCCGATATTCACTAAAGGGTCACACAAAGTCAATACATTCTGTGTGTTGGGATCCTTCTGGAGAGTTCTTGGCATCTGTTAGCGAAGACTCTGTCAGGGTTTGGACTCTTGGATCCGGAAGTGAAGGGGAATGTGTTCATGAGCTTAGCTGTAATGGCAATAAGTTTCACTCGTGCGTTTTCCATCCGACGTATTCTTCATTGCTGGTCATTGGTTGTTACCAGTCATTGGAGCTTTGGAACATGACCGAGAACAAAACGATGACTCTATCTGCTCACGACGGTCTTATTGCTGCTTTAGCCGTCTCAACTGTAAACGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTCAAGCTCTGGAAGTGA 2757 0.4131 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQPQPQQSQQHQQQQQQQQQQMQMQQMLLQRQHQQQQQQQQQQQQQQQQQHQQQQQQQPQHQQQQQQQQQQQQQGRDRAHLLNGGGANGLVGNPSTANAIATKMYEERLKIPLQRDSLEDAAMKQRFGDQLMDPNHASILKSSAAPGQPSGQVLHGSAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLMAIPGSNQGGNNLTLKGWPLTGLEQLRSGLLQQQKPFIQSPQPFHQLPMLTAQHQQQLMLAQQNLASPSASDDSRRLRMLLNTRNMGVGKDGLPNPVGDVVSNVGSPLQAGGPPFPRGDTDMLMKLKLAQLQHQQQQNANPQQQQLQQHNLSNQQSQSSNHNMHQQDKVGGGGGGGGGSVTGDGSMSNSFRGNDQVSKNQTGGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSGSTHTPGDVISMPSSIPHNGSSSKPLMMFGTDGTGTLTSPSNQLWDDKDIELQADVDRFVEDGSLDDNVESFLSHDDTDHRDPVGRMDVSKGFTFSEVNSVRASTSKVVCTHFSSDGKLLASGGHDKKAVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSYDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDFDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRFLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMTENKTMTLSAHDGLIAALAVSTVNGLVASASHDKFVKLWK 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00741 918 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 886 918 - -
Tsu01g00741 918 ProSitePatterns Trp-Asp (WD) repeats signature. 695 709 IPR019775 -
Tsu01g00741 918 Gene3D - 599 762 IPR015943 GO:0005515
Tsu01g00741 918 Gene3D - 763 918 IPR015943 GO:0005515
Tsu01g00741 918 Pfam LisH 10 36 IPR006594 GO:0005515
Tsu01g00741 918 ProSiteProfiles Trp-Asp (WD) repeats profile. 676 711 IPR001680 GO:0005515
Tsu01g00741 918 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 719 757 - -
Tsu01g00741 918 ProSiteProfiles Trp-Asp (WD) repeats profile. 719 761 IPR001680 GO:0005515
Tsu01g00741 918 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 676 711 - -
Tsu01g00741 918 MobiDBLite consensus disorder prediction 383 575 - -
Tsu01g00741 918 MobiDBLite consensus disorder prediction 477 575 - -
Tsu01g00741 918 MobiDBLite consensus disorder prediction 153 193 - -
Tsu01g00741 918 MobiDBLite consensus disorder prediction 425 462 - -
Tsu01g00741 918 Coils Coil 122 155 - -
Tsu01g00741 918 SMART Lish 8 40 IPR006594 GO:0005515
Tsu01g00741 918 MobiDBLite consensus disorder prediction 240 260 - -
Tsu01g00741 918 CDD WD40 630 918 - -
Tsu01g00741 918 SUPERFAMILY WD40 repeat-like 628 918 IPR036322 GO:0005515
Tsu01g00741 918 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 918 IPR044716 GO:0003714
Tsu01g00741 918 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Tsu01g00741 918 ProSiteProfiles Trp-Asp (WD) repeats profile. 801 841 IPR001680 GO:0005515
Tsu01g00741 918 Pfam WD domain, G-beta repeat 881 918 IPR001680 GO:0005515
Tsu01g00741 918 Pfam WD domain, G-beta repeat 673 708 IPR001680 GO:0005515
Tsu01g00741 918 Pfam WD domain, G-beta repeat 715 752 IPR001680 GO:0005515
Tsu01g00741 918 Pfam WD domain, G-beta repeat 797 831 IPR001680 GO:0005515
Tsu01g00741 918 Pfam WD domain, G-beta repeat 635 665 IPR001680 GO:0005515
Tsu01g00741 918 MobiDBLite consensus disorder prediction 153 176 - -
Tsu01g00741 918 ProSiteProfiles Trp-Asp (WD) repeats profile. 634 675 IPR001680 GO:0005515
Tsu01g00741 918 MobiDBLite consensus disorder prediction 94 113 - -
Tsu01g00741 918 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 918 - -
Tsu01g00741 918 SMART WD40_4 669 708 IPR001680 GO:0005515
Tsu01g00741 918 SMART WD40_4 755 791 IPR001680 GO:0005515
Tsu01g00741 918 SMART WD40_4 794 832 IPR001680 GO:0005515
Tsu01g00741 918 SMART WD40_4 627 666 IPR001680 GO:0005515
Tsu01g00741 918 SMART WD40_4 879 918 IPR001680 GO:0005515
Tsu01g00741 918 SMART WD40_4 712 752 IPR001680 GO:0005515
Tsu01g00741 918 SMART WD40_4 838 877 IPR001680 GO:0005515
Tsu01g00741 918 ProSiteProfiles Trp-Asp (WD) repeats profile. 886 918 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00741 Tsu-Chr1 6585727 6594656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00741 652 881 U-box Gene Family AT2G33340 31.707 3.83e-20 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Tsu01g00741 WD40 0.049 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00741 - - gmx:100779972 1256.12