Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00734 ATGagagaaatgaaaatgaataagGAAAATGGTGAGAATATGAGAGTGACTCGAGCAAGAGCTAAAGCCATGGAAGCATCTTCAAGAAATGTTGGATTGAGAGATATAACCAACATTTCAACAAAATCTCATCATAAGCGTTTTCAAACCTCGAATTTTCAGAGTGAAGGTAATAAGAAGAGAAAGACCAAGGTAGCTTCAGAAGATCATGTCCCCTTACAAATTGTGACAACCAAAGAGGATCCTAAGACAAAATTAGCTGAAGATTcatcgatgatgatgatggaaaaGTCACTGCAAGTGCAACCTTCTGTTGAAAATCCCCCGCTTTCAATGCAGGATTTTGTCAGCTCTCCGGATAAAGACATAAATATGATATGTGAGAAACTAAGAGACTCAGTTGACTTGGGAATTGTGGACATTGATTCAAAGTTAAAGGATTCTCTTGTTTGGACTTCTTATGCTCCTGATATATACAATAGTATTCATCTCAGAGAGTGTGAAAGAAGACCATCAGCTGATTACATGGAAAAGTTGCAGCAATACATCACTCCAACTATGCGGGGAATTCTGGTCGATTGGCTTGTGGAGGTTACTGAGGAATATCAGCTAGTTCCAGACACACTTTACCTTGCTGTGAATCTCATTGATCGATTCCTTTCTCAACGTTTGGTTACAAAACAAACGCTCCAGTTGCTTGGTATCACTTGCATGCTGATTTCATCTAAGTATGAAGAGATTATGGCTCCTCCATTACAAGATTTTTGCGACATCACAGATAATACATACTCGAAACAACAGGTCTTGAAAATGGAGAAAGAGGTTCTAAATCTTCTGCGTTTCCAATTAGCTGTTCCTACAATCAAAACATTTCTCAGgaggttcattgttGTATCACAATCTTCTTTCAAGGTTGTTTATGATGAACTGGAATTCATCGCAAATTATTTAGGAGAACTTGCTCTTGTTGAATACAGCTTCTTGCAATTTCGACCTTCCAAGATAGCTGCATCTGCGGTTTTTCTTGGCAGATGGACCCTCGACCAGTCAGAACATCCATGGAATCCAACTCTAGAGCACTATACAAATTACAAAGCATCTGAGCTGAAAACTACTGTCCTTGCACTACTGGATTTGCAACTCAATACCAAAGGCTGTTGTCTGACTGGTGTACGCGACAAATATAACCATCCGAAGTTCCAAAGAGTGGCGAACTTGATTCCGAAACCTGTGGAATCTCTTTTCTAG 1248 0.379 MREMKMNKENGENMRVTRARAKAMEASSRNVGLRDITNISTKSHHKRFQTSNFQSEGNKKRKTKVASEDHVPLQIVTTKEDPKTKLAEDSSMMMMEKSLQVQPSVENPPLSMQDFVSSPDKDINMICEKLRDSVDLGIVDIDSKLKDSLVWTSYAPDIYNSIHLRECERRPSADYMEKLQQYITPTMRGILVDWLVEVTEEYQLVPDTLYLAVNLIDRFLSQRLVTKQTLQLLGITCMLISSKYEEIMAPPLQDFCDITDNTYSKQQVLKMEKEVLNLLRFQLAVPTIKTFLRRFIVVSQSSFKVVYDELEFIANYLGELALVEYSFLQFRPSKIAASAVFLGRWTLDQSEHPWNPTLEHYTNYKASELKTTVLALLDLQLNTKGCCLTGVRDKYNHPKFQRVANLIPKPVESLF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00734 415 CDD CYCLIN 285 377 IPR013763 -
Tsu01g00734 415 Gene3D - 157 405 - -
Tsu01g00734 415 Pfam Cyclin, N-terminal domain 157 283 IPR006671 -
Tsu01g00734 415 SMART Cyclin_C_2 286 409 IPR004367 -
Tsu01g00734 415 ProSitePatterns Cyclins signature. 188 219 IPR006671 -
Tsu01g00734 415 CDD CYCLIN 187 276 IPR013763 -
Tsu01g00734 415 MobiDBLite consensus disorder prediction 41 56 - -
Tsu01g00734 415 PIRSF Cyclin_A_B_D_E 1 414 IPR039361 -
Tsu01g00734 415 SUPERFAMILY Cyclin-like 147 283 IPR036915 -
Tsu01g00734 415 MobiDBLite consensus disorder prediction 41 68 - -
Tsu01g00734 415 Gene3D - 171 284 - -
Tsu01g00734 415 PANTHER CYCLIN-A2-4 24 415 - -
Tsu01g00734 415 PANTHER CYCLINS 24 415 IPR039361 -
Tsu01g00734 415 SUPERFAMILY Cyclin-like 285 408 IPR036915 -
Tsu01g00734 415 Pfam Cyclin, C-terminal domain 286 407 IPR004367 -
Tsu01g00734 415 SMART cyclin_7 290 378 IPR013763 -
Tsu01g00734 415 SMART cyclin_7 193 277 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00734 Tsu-Chr1 6539439 6544189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00734 13 415 Core Cell Cycle Gene Families AT5G25380 48.081 3.42e-127 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00734 K06627 - gmx:100777132 477.633