Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00727 ATGGGACtttcaaagaaagaagaagaaagagttgAAAGAATAATTCGAGGTTTATTAAAACTTCCCGAAAATCGAAGATGCATCAATTGCAATGCTTTGGGACCACAATATGTTTGTACAACTTTCTCAACATTTATCTGCACAAATTGCAGTGGACTACATCGAGAGTTCACACATCGAGTAAAATCTGTGTCAATGGCAAAATTTACACAAGAAGAAGTCACTGCTCTTCAAACTGGTGGCAATGAGAGAGCAAAGCAGATTTATTTTAAAGGGTGGGATCCTACACGGCATTCTTATCCCGATTCCAGTAATATGCACAGACTTAGAGAATTTATCAAGAATGTTTACGTGGAAAGAAAATATGCCGGCGAAAGAAGTCAAGAAAATCTTCCCAGGATTAAATTGAATGACAAAGAGGAGTCCAATGAGAAGCTGAAGAGTAGTAGTTCATTTCGATTAGAGTTCATGAGTCAGAAGTCAAGTCCTGTTCCAAGAAGTTCCAGTGCAAGAAGCGATGACGCGAGTGTTAGATATCTATATGATGAAAGCAGAAGTCCTAAATATGTACAAAAATATACGAGGAACGGAGGATTCAGCAGAAGTCCTATAAAGTTTGAGGTTGTTGATGACAGGTTTCGAGACGAAGAATATAAAAACCGCAGACAATCAAATCTTGAATCAAAGCTAAAACAACTTTCACTTGATAGTCATAAGAATGTGGACACGTTACAAGCTCCGGTTCAACCATCTTCGGGTGAAATGACAACGCAGAATGATTTATCTTTACAAGTTATAACTTCTGGTGGAGAAGGTTCTGTTGAAGAAAAACCATCTGATACTGCTATTGTACCTGTAGAAGAAACACCAAGTATGACACAGGAAAGTCAAAATAATTGGGCCAAATTTGAAACTTCTACAAATGAAAATGTTCCTAAGACTTCAAACACCAACACCATGAAATCTCCTACAATAGAACCAACACCTGAGGCAAAAATTTCAAGTCCTTTAGACCTTTTACTTTTTGAATTGTCAGGCTCTTTTGCTCCAACCACTAGTGAAAATGTTCCAACAACTTCAACAGTAGAAAAGGTCTCTACATTGGATTTTCCAGCTACTTCAATGGAGGAGACAAATTCATCAGCTTCTGAGCTGGCACAACCTTCTAATGAAGCTACTCCATCACAATTTGAGTTACTTGAGCCAGAAGCTTCCATTGAAGTTTCACATGCAGATAAAGCACAAACAGAAGCTTCCATTGAAGTTTCGCATGCACATAAACCACAAATAGAAGATTCCATTGAAGTTTTACATGCACATAAACCACAAATAGAAGATTCCATTGAAGTTTTACATGCACATAAACCACCAACCATGCAAACAACACAACCAACAAGTTCAACCAACAAAGATATAGCTTCAAATAATGAGCCGTCATTTTCTCTTAATACACACGAATCATCACATGCTTTCGATGAACTTTCTTCTCAAACTGCCTCGAATCCTACTCAAGACACCAGACCTAATCTTGGTTCCCAGCCTAGTACAGTAGAAACCAAGTCTAGTGGAAGAATGGAACTACCAGAGGATCTTTTTACTACAAAGTACTTTTCTGGTCCTCCACCACATCCAAGTTGGCAGAATCTTCAATCTCATGTATTGGGATATGGCATGCAATATTATCCTAATGCATTGCCTCCTCATCCTCAATCAGCACTTCCCATTGCACCAAAATCCATGAACCCTTTTGATGTAACTGAAGGGAGAGGTCTATCTCATGCATCATCAgTTCCTGCATTGGCATCAATGCAAGGTGTGGCATCAATGCAAGGTGTGGTGCCAGCTACATCACACAGAACAGGATTAATACATACTTCAAGTCTTGGTTCTTTAGATACAATGATGCCTCAGTCCACAAGTTATGCACCCCCAATTACTGGTCTGTGTTTCGATCAAGTTAATAATGAAGATCAGTATCATAGATCAAAAATAGTAAACACCTACAATAGTGACATATCTGGTTTTGGATCACTAGACACCATTCAACAATCATATGGGGCATATGGAACACAAGGAATTCCAAACTCTTTTTCCAATACAAGAAGAAatccatttgaatttgaatag 2127 0.3771 MGLSKKEEERVERIIRGLLKLPENRRCINCNALGPQYVCTTFSTFICTNCSGLHREFTHRVKSVSMAKFTQEEVTALQTGGNERAKQIYFKGWDPTRHSYPDSSNMHRLREFIKNVYVERKYAGERSQENLPRIKLNDKEESNEKLKSSSSFRLEFMSQKSSPVPRSSSARSDDASVRYLYDESRSPKYVQKYTRNGGFSRSPIKFEVVDDRFRDEEYKNRRQSNLESKLKQLSLDSHKNVDTLQAPVQPSSGEMTTQNDLSLQVITSGGEGSVEEKPSDTAIVPVEETPSMTQESQNNWAKFETSTNENVPKTSNTNTMKSPTIEPTPEAKISSPLDLLLFELSGSFAPTTSENVPTTSTVEKVSTLDFPATSMEETNSSASELAQPSNEATPSQFELLEPEASIEVSHADKAQTEASIEVSHAHKPQIEDSIEVLHAHKPQIEDSIEVLHAHKPPTMQTTQPTSSTNKDIASNNEPSFSLNTHESSHAFDELSSQTASNPTQDTRPNLGSQPSTVETKSSGRMELPEDLFTTKYFSGPPPHPSWQNLQSHVLGYGMQYYPNALPPHPQSALPIAPKSMNPFDVTEGRGLSHASSVPALASMQGVASMQGVVPATSHRTGLIHTSSLGSLDTMMPQSTSYAPPITGLCFDQVNNEDQYHRSKIVNTYNSDISGFGSLDTIQQSYGAYGTQGIPNSFSNTRRNPFEFE 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00727 708 MobiDBLite consensus disorder prediction 373 396 - -
Tsu01g00727 708 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Tsu01g00727 708 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Tsu01g00727 708 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Tsu01g00727 708 MobiDBLite consensus disorder prediction 304 329 - -
Tsu01g00727 708 CDD ArfGap_AGFG 12 122 - -
Tsu01g00727 708 Gene3D Arf GTPase activating protein 2 134 IPR038508 -
Tsu01g00727 708 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Tsu01g00727 708 MobiDBLite consensus disorder prediction 455 524 - -
Tsu01g00727 708 MobiDBLite consensus disorder prediction 304 331 - -
Tsu01g00727 708 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 130 IPR001164 GO:0005096
Tsu01g00727 708 PANTHER ARFGAP/RECO-LIKE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 706 - -
Tsu01g00727 708 SMART arf_gap_3 12 130 IPR001164 GO:0005096
Tsu01g00727 708 MobiDBLite consensus disorder prediction 456 522 - -
Tsu01g00727 708 Pfam Putative GTPase activating protein for Arf 13 124 IPR001164 GO:0005096
Tsu01g00727 708 PANTHER ARFGAP/RECO-RELATED 1 706 IPR044820 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00727 Tsu-Chr1 6484259 6489418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00727 12 117 C2H2 Transcription Factor Family AT4G05330 37.500 1.38e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00727 - - cam:101499268 920.998