LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g00725	ATGAAAGTGATGAAGGTGAAATATGTGTTAATGGTTGCTGCCTTAACCATGATGGTAGGAATAGTTGAAGTTGATTCAGCACCAAATACTACCTGCACCCAGATTTGTGGAAATGTAGAAATTCCATATCCATTTGGCATAAACATCACCAACAACAACACTTCATCGGATTGTTTCTCAGGTCTTAGATCAATTCAGCTAATTTGCAATGATTCCATATTATATGCTGGTCATAACGTGCCAGTGTTAAACATAAACATCTCCACAGCTCAAATCGACGTGTTATTTTTCACCTCTCAGTATTGTGGTGCTGGTGGTTATAAAAATAAACCCGGGTTTCAGGGTGATCCATATACCATTTCAAGCAAAGAAAACAAGTTCCTAACTATTAGTAATGACGGTTACGGCTACCTCAACAGTTACATTGATAACAATAAATATTCAACAGGGTGCGTAACAAGTTCTTTTGGTGGTGATCCAAGTTTGTTTGATGATGGAAGTGGAACATGTTCGGGTGTAGGGTGTTGCCAAGTCGATATTCCTCCTGGAATTTGGAATATAAGTATAGAAGCTTTTCATTTCAACACTTCATCTGAATATTGTAGCTATTCATTTGTTGTGAAGAATGGCAACTATAATTTTAACACCACTCATATAAGAGAAGGTTTACCTGTCAATCAATTACCTATGGTTCTTGACTGGACTGTTGGTGACTTTGACGATAACTGCAGTACAGCTTCTTCCAAGAATGATGGAGTCAACTATCCGTGCAAGAACAATAGCTATTGTGATGACAACGCCACATATAATCTTGGTTACCTATGCAGATGCAAAGAAGGGTATAAAGGAAATCCCTATGATCCCCTTGGCTGCACAGATATTAACGAATGTGAAAACGGCACACACAAATGCAAAAGTAAAGAAAATTGTAAGAACACTATTGGAAATCACACGTGTTTCTGTCCTATGGGGTATTCTGGATATGGAACAAACGACCAAGGGTGCCAACCACATGCAAGTTTAATAGTACTATATACTGTCCTTGGAGTAGGAGCAacatttattcttctttttctggTGACATTCTCGAACTTAATATACCATAAGAGGAAATCCATCAAATTGAGAGAGAAATTCTTTGAGCAGAATGGTGGtttaattttgaaacaaaaactcTCCACAAGAGAAGACTCCTCCTCTCAAACAACTCAAATATTCACACGAGATCAACTAAATAGGGCCACCAAAAACTTTGACGAGAGTTTAATCATTGGCAAAGGTGGTTTTGGTACTGTTTTCAAAGGATTTCTAGATAATGAAAGAATCGTGGctatcaaaaaatcaaaaataatagATAGAAGCCAAATCGATCAATTCATTAATGAGGTGGTTGTTCTCTCTCAAATAAATCATAGGAATGTAGTCAAACTCTTGGGGTGTTGTTTAGAGACAGAAGTTCCTTTGTTGGTTTATGAATTTGTTAACAATGGTACCCTTTCTGGCTTAATACACACACAAGGTAATAAGGTGAATAATGAATCATGGAAAACTCGTCTTAAGATAGCAGCAGAGGTAGCTGGAGCTCTGTCATATCTGCATTCATCTGCCTCAATACCCATTATCCATAGAGATGTCAAGAGTGATAATATTCTCTTAGATGGAACCAACACTGCCAAAGTATCTGATTTTGGAGCTTCAAGATTGGTTCCACTTGATCAAACTGAAGTAGCCACAATGGTGCAAGGAACTATTGGCTACTTAGACCCGGAGTACATGCAAACAAGCCAATTGACTGAAAAAAGTGATGTATATAGCTTTGGGGTAGTTCTTGTGGAGCTTCTAACAGGGGAGAGACCTTTTAGTTTTGGTAGGCCAGAAGAGAGAAGAAGTCTTGCTATGCATTTTCTGTCCTGCTTGAAAAAGGATAATGTGTTTGATGTCATTCAAGAAGGTATGttgaatgaagaaaacaaacaagaGATCAGGGAGGTAGTTGTTCTTTTAATGGATAAGCACTCTTGGATCAATGATGACTTAAATGTAGAGGAGAATCAGTACTTGCTTCATGAATCGTCATCTAGGATTTATGAAACTGGTGCAGCAGCAAACATGGAGATATTGGATATGACAGCTTGA	2136	0.3684	MKVMKVKYVLMVAALTMMVGIVEVDSAPNTTCTQICGNVEIPYPFGINITNNNTSSDCFSGLRSIQLICNDSILYAGHNVPVLNINISTAQIDVLFFTSQYCGAGGYKNKPGFQGDPYTISSKENKFLTISNDGYGYLNSYIDNNKYSTGCVTSSFGGDPSLFDDGSGTCSGVGCCQVDIPPGIWNISIEAFHFNTSSEYCSYSFVVKNGNYNFNTTHIREGLPVNQLPMVLDWTVGDFDDNCSTASSKNDGVNYPCKNNSYCDDNATYNLGYLCRCKEGYKGNPYDPLGCTDINECENGTHKCKSKENCKNTIGNHTCFCPMGYSGYGTNDQGCQPHASLIVLYTVLGVGATFILLFLVTFSNLIYHKRKSIKLREKFFEQNGGLILKQKLSTREDSSSQTTQIFTRDQLNRATKNFDESLIIGKGGFGTVFKGFLDNERIVAIKKSKIIDRSQIDQFINEVVVLSQINHRNVVKLLGCCLETEVPLLVYEFVNNGTLSGLIHTQGNKVNNESWKTRLKIAAEVAGALSYLHSSASIPIIHRDVKSDNILLDGTNTAKVSDFGASRLVPLDQTEVATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGERPFSFGRPEERRSLAMHFLSCLKKDNVFDVIQEGMLNEENKQEIREVVVLLMDKHSWINDDLNVEENQYLLHESSSRIYETGAAANMEILDMTA	711

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g00725	711	Pfam	Calcium-binding EGF domain	293	335	IPR001881	GO:0005509
	Tsu01g00725	711	ProSitePatterns	Protein kinases ATP-binding region signature.	424	447	IPR017441	GO:0005524
	Tsu01g00725	711	Pfam	Wall-associated receptor kinase galacturonan-binding	32	93	IPR025287	GO:0030247
	Tsu01g00725	711	SUPERFAMILY	Protein kinase-like (PK-like)	399	671	IPR011009	-
	Tsu01g00725	711	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	540	552	IPR008271	GO:0004672\|GO:0006468
	Tsu01g00725	711	Pfam	Protein kinase domain	422	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g00725	711	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	25	666	IPR045274	GO:0007166
	Tsu01g00725	711	SUPERFAMILY	EGF/Laminin	293	328	-	-
	Tsu01g00725	711	ProSiteProfiles	EGF-like domain profile.	293	336	IPR000742	-
	Tsu01g00725	711	SMART	serkin_6	418	687	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g00725	711	Gene3D	Laminin	240	335	-	-
	Tsu01g00725	711	SMART	egfca_6	293	336	IPR001881	GO:0005509
	Tsu01g00725	711	Gene3D	Phosphorylase Kinase; domain 1	384	493	-	-
	Tsu01g00725	711	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2	25	666	-	-
	Tsu01g00725	711	ProSiteProfiles	Protein kinase domain profile.	418	675	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g00725	711	SMART	egf_5	242	292	IPR000742	-
	Tsu01g00725	711	SMART	egf_5	296	336	IPR000742	-
	Tsu01g00725	711	Gene3D	Transferase(Phosphotransferase) domain 1	494	675	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g00725	Tsu-Chr1	6472134	6475320	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g00725	4	663	Receptor kinase-like Gene Family	AT1G21230	42.857	4.22e-161	481

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Tsu01g00725		Pkinase	1.6e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g00725	-		-	mtr:MTR_1g010260	908.672