LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g00724	ATGAAACCGATGAAGAAGACTTGGCTGCAAGTattgttaataataattgttgCATTATTATCCTCCTCCCTGCTGCAAGTAGGAGGAGTTGCATCAGCAGATTCACCAGAAAGACAAGCTCTGCCTGGCTGCAAATACTACAGTCCTTGTGGAAATGTAAGAATTCCATATCCATTTGGCATAGGAACTTCAACAGCACAAGATCATGCACCATGTTACATGAATCCCAAATATAATCTCACTTGTAATGAAGAGTCCAAGTTAGTCCGTGCAGGTAAGAATACCGAAATCCTAGACATAAATCTACAAGGTCAATTTGTTGTGTCACTTCCTGTATCCAAGTATTGCAGAAATGACGATCCTGTCACGCTTGGCATCACTAATTTCAGCATTTCAAGCAAGGAAAACAAGTTTGTGACTGTTGGATGCGACAGTTATGGTTATCTCGATAGCACTTATGACGGTGACACATATTCGACAGGGTGTTTAACAAGATGTCATGGCCATAAAATAGTGTATGAAAATGGAACCTGTTCCGGTATTGGGTGCTGCCAGGTTGATATTCCTCCTAGAATGAGGAACATCTCTATAAAAGCTTCTTCCTTCAACCGTTCGTTGCAACAACCTTCAATAAACTGCACCTATTCCTTTGTTGTTAAGAAAGAAAACTATAGTTTTTCGTCCactcatttaaataaaaatggtttTCCTTTTACGGAACTCCCTGTGGTTCTTGACTGGGCCGTAGGCGCGTCCGATGAAAACTGCAAGGACCATAATGGAATTTTCTATGCGTGCAAGAACAATAGTGAATGCTATGGCAGCGACACAGGTTATGGTTACCTATGTAGATGCAAAGAAGGTTATGAAGGAAATCCCTACCATCCCCTTGGCTGCACAGACATTGACGAATgtgaaacaaacaaatatagATGCAAAACAAAAGCAAATTGTAAGAACATTGATGGGAATCACACATGTGTCTGTCCAAAGTGGCATTCCGGAGATGGAACAACGGCAGCAGGGTGCAAAAATTCAATAGTATTACCTACTGTCCTTGGAGTAGGAGCAacatttattcttctttttgtgGGGACATTCTCGTACATAATATACCATAAGAGGAAATCCATCAAATTGAGAGAGAAATTCTTTGAGCAGAATGGTGGtttaattttgaaacaaaaactcTCCACAAGAGAAGACTCTTCCTCTCAAACAACTCAAAGTGCTCAAATATTCACACGAGATGAACTAAACAGGGCCACCAAAAACTTTGACGAGAGTTTAATCATTGGCAAAGGTGGTTTTGGTACTGTTTTCAAAGGATTTCTAGATAATAAAAGAATCGTGGctatcaaaaaatcaaaaataatagATAGAAGTCAAATCGATCAATTCATTAATGAGGTGGTTGTTCTCTCTCAAATAAACCATAGGAATGTGGTCAAACTCTTGGGGTGTTGTTTAGAGACAGAAGTTCCTTTGTTGGTTTATGAATTTGTTACCAATGGTACCCTTTCTGGTTTTATACACACACAAGGTAATAAGGTGAATAATGAATCGTGGAAAACTCGTCTTAAGATAGCAGCAGAGGTAGCTGGAGCACTGTCATATCTGCATTCATCTGCCTCAATACCAATTATCCATAGAGATGTCAAGAGTGATAACATTCTCTTAGATGGAACCAACACTGCCAAAGTATCTGATTTTGGAGCTTCAAGATTGGTTCCACTTGATCAAACTGAAGTAGCCACAATGGTGCAAGGAACTATTGGCTACTTAGACCCTGAGTATATGCAAACAAGCCAATTGACTGAAAAAAGTGATGTATATAGCTTTGGGGTAGTTCTTGTGGAGCTGCTAACAGGGGAGACACCTTTTAGTTTTGGTAGGCCAGAAGAGAGAAGAAGTCTTGCTATGCATTTTCTCTCTTGCTTGAAAAAGGATAATGTGTTTGAAATTATTCAAGATGGTATGttgaatgaagaaaacaaacaagaGATCAAGGAGGTAGCTGTTCTCGCGGCAAAGTGTTTGAGACTTAGAGGGGAAGAAAGACCTAGCATGAAGGAAGTGGCTATGGAATTGGAGGGAATGAGGTTAATGGATAAGCACTCTTGGATCAATGATGACTTAAATGTAGAGGAGAATCAGTACTTGCTCCATGAATCGTCATCAAGCATTTATGAAACTGGTGATAGCAGCAAACATGGAGATATTGGATATGACAGCTTGAAAGATCAGGCACTAATTGTCTTGGATGATGGAAGATGA	2277	0.3799	MKPMKKTWLQVLLIIIVALLSSSLLQVGGVASADSPERQALPGCKYYSPCGNVRIPYPFGIGTSTAQDHAPCYMNPKYNLTCNEESKLVRAGKNTEILDINLQGQFVVSLPVSKYCRNDDPVTLGITNFSISSKENKFVTVGCDSYGYLDSTYDGDTYSTGCLTRCHGHKIVYENGTCSGIGCCQVDIPPRMRNISIKASSFNRSLQQPSINCTYSFVVKKENYSFSSTHLNKNGFPFTELPVVLDWAVGASDENCKDHNGIFYACKNNSECYGSDTGYGYLCRCKEGYEGNPYHPLGCTDIDECETNKYRCKTKANCKNIDGNHTCVCPKWHSGDGTTAAGCKNSIVLPTVLGVGATFILLFVGTFSYIIYHKRKSIKLREKFFEQNGGLILKQKLSTREDSSSQTTQSAQIFTRDELNRATKNFDESLIIGKGGFGTVFKGFLDNKRIVAIKKSKIIDRSQIDQFINEVVVLSQINHRNVVKLLGCCLETEVPLLVYEFVTNGTLSGFIHTQGNKVNNESWKTRLKIAAEVAGALSYLHSSASIPIIHRDVKSDNILLDGTNTAKVSDFGASRLVPLDQTEVATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGETPFSFGRPEERRSLAMHFLSCLKKDNVFEIIQDGMLNEENKQEIKEVAVLAAKCLRLRGEERPSMKEVAMELEGMRLMDKHSWINDDLNVEENQYLLHESSSSIYETGDSSKHGDIGYDSLKDQALIVLDDGR	758

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g00724	758	Gene3D	Laminin	253	304	-	-
	Tsu01g00724	758	SMART	serkin_6	426	709	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g00724	758	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	22	727	IPR045274	GO:0007166
	Tsu01g00724	758	Gene3D	Laminin	305	343	-	-
	Tsu01g00724	758	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2	22	727	-	-
	Tsu01g00724	758	SMART	egf_5	304	344	IPR000742	-
	Tsu01g00724	758	SMART	egf_5	255	300	IPR000742	-
	Tsu01g00724	758	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	548	560	IPR008271	GO:0004672\|GO:0006468
	Tsu01g00724	758	SUPERFAMILY	Protein kinase-like (PK-like)	404	698	IPR011009	-
	Tsu01g00724	758	Pfam	Wall-associated receptor kinase galacturonan-binding	44	106	IPR025287	GO:0030247
	Tsu01g00724	758	Pfam	Protein tyrosine and serine/threonine kinase	432	697	IPR001245	GO:0004672\|GO:0006468
	Tsu01g00724	758	Gene3D	Transferase(Phosphotransferase) domain 1	502	720	-	-
	Tsu01g00724	758	SMART	egfca_6	301	344	IPR001881	GO:0005509
	Tsu01g00724	758	ProSiteProfiles	EGF-like domain profile.	301	339	IPR000742	-
	Tsu01g00724	758	ProSiteProfiles	Protein kinase domain profile.	426	709	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g00724	758	CDD	STKc_IRAK	432	700	-	-
	Tsu01g00724	758	ProSitePatterns	Protein kinases ATP-binding region signature.	432	455	IPR017441	GO:0005524
	Tsu01g00724	758	Gene3D	Phosphorylase Kinase; domain 1	388	501	-	-
	Tsu01g00724	758	SUPERFAMILY	EGF/Laminin	295	334	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g00724	Tsu-Chr1	6457460	6460636	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g00724	39	758	Receptor kinase-like Gene Family	AT1G21250	44.265	0.0	563

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Tsu01g00724		PK_Tyr_Ser-Thr	2.3e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g00724	-		-	mtr:MTR_1g010260	947.962