LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g00721	ATGCATCTTCCATTAATAATGGTTGCTGCATTATTATTCATGTTGGTAGAAGCAGTTGCATCTGATCAACCCAAACAAGTCCTACCAGGCTGCAATTACACTTGTGGAGATATACAAATTCCATATCCATTTGGCATAGGATATTCAACAACACTAAATCATACACCATGTTACATGGATTCCAAATTTAATCTCACTTGTTTAGACAACTCGACATTAATCCGTGGTAAGCGTATCCAAGTCCTAGACATAAATCCCCTAGGTCAAATggtaatgaatttttttgtctcGCATCTCTGTActaatagtagtagtaataataatactgaAGAAGCGAATACACCTTTTCTCAAAGTTTCCTCTTTCACAATTTCAAGCACGGAAAACAAATTCATAACTGTCGGTTGTGACAGTTACGGATATCTCAACAGTAATTTCAAGGGTGCCACATATTCAACAGGGTGCTTAACAAGATGTTATGATTATGATCCTAAAGTGGTAAATGGGAATAACACTGGAAAATGCACAGGTTTAGGGTGTTGCCAAGTAGATATTCCTCCACTTATGAGAAATATCACTATACAAACATTTAAATTCCCAACTTCTACATCTCAGAAAGGTTGTAGCTATTCCTTTATTGCAAAACAAGGATCCTATAATTTTTCTGTAGAGGATATAAATAATCTGCCTTATAAAACTTTTCCCATGGTTGTTAACTGGGCCGTTACAAATGAATCATGTCAAATAGCACAAACTACGGATAGCTATGCCTGCAAGGAAAATAGTGAATGTGTCGATAATGATTCAGATTATGACGGTTATAGATGCAAGTGTTTGGAAGGTTTTGAAGGAAATCCATACCTTCCTGGAGGCTGCACAGACATTGACGAATGTGCAACAAATAAACATGAATGCAAAAATAGCTCATGTCTCAACACCCCTCCTGGGAATTATACTTGTGTCTGTCCTGTAGGCCAAACCGGAGATGGAAGAAAGGAAGGAGGGTGCCGACTATCTGATGGAAATGCATATCCAGTAGTACCTACTGTCCTTGGAGTGGGAACAGCATTTATTGTTCTATTTGTGGGGATAATTTCCTTCTCAATATACCAAAAGAGGAAACTTACCAAATTGAAAGAGAAATTCTTTAGGCAGAATGGAGGTTCGATTTTGGAACAGAAACTTCTTCAAAGAAAAGGCTCATCTCAAATAGctaatatttttaaagaaaatgaacTAAGGAAAGCCACTAACAACTATGACGAGAGCTTCATCATTGGTAGAGGAGGTTTTGGTACAGTTTTCAAAGGAGAACTGGATAACAATAGAATTGTTGCTATCAAAAAGTCCAAAACAATAGATGAAAGCCAAATTGAGCAATTCATTAATGAGGTGGATGTTGTCTCCCAAATAAATCACAGGAATGTGGTTAAACTCTTGGGGTGTTGTCTAGAAACAGAAGTTCCTTTGCTGGTTTATGAATTTGTTAGCAATGGTACTCTTTCTGATTTTATACACAAAGAAGATAAAGTGAATAATACAACTTGGAAAATTCGTCTTAAGATAGCAGCAGAGGTAGCCGGAGCTTTGTCATATCTACATTCAGCAGCCTCAATACCAATTATCCACAGAGATGTTAAGAGTGATAACATTCTCTTAGATGGAACAAACACTGCCAAAGTAGCTGATTTTGGAGCTTCAAGATTGGTTCCACTTGATCAAACTGAAGTAGCCACAATGGTGCAAGGAACTATTGGCTACTTAGATCCAGAGTATATGCAAACAAGCCAATTGACTGAAAAAAGTGATGTATATAGCTTTGGGGTAGTTCTTGTGGAGCTGCTAACAGGGGAGAGACCTTTTAGTTTTGGTAAGCCAGAAGAGAGAAGAAGTCTCGCTATGCATTTTCTGTCCTGCTTGAAAAAGGATAATTTGTTTGAAGTTATTCAAGAAGGTATGttgaatgaagaaaacaaacaagaGATCAAGGAAGTAGCTGTTCTTGCGGCAAAGTGTTTGAGACTAAGAGGGGAGGAAAGACCAAGCATGAAGGAAGTGGCTATGGAATTGGAGGGAATGAGGTTAATGGATAAGCACTCTTGGATCAACGAAGACCTAAATGTAGAGGAGAGTCGGTACTTGCTTCATGAATCATCATCTAGCATTTATGAACTTGGTGATAGCAGCAAACATGGAGATATTGGGTATGACAGCTTGAAAGATCATGTATTAATTGCCTTGGATGATGGAAGATGA	2256	0.3675	MHLPLIMVAALLFMLVEAVASDQPKQVLPGCNYTCGDIQIPYPFGIGYSTTLNHTPCYMDSKFNLTCLDNSTLIRGKRIQVLDINPLGQMVMNFFVSHLCTNSSSNNNTEEANTPFLKVSSFTISSTENKFITVGCDSYGYLNSNFKGATYSTGCLTRCYDYDPKVVNGNNTGKCTGLGCCQVDIPPLMRNITIQTFKFPTSTSQKGCSYSFIAKQGSYNFSVEDINNLPYKTFPMVVNWAVTNESCQIAQTTDSYACKENSECVDNDSDYDGYRCKCLEGFEGNPYLPGGCTDIDECATNKHECKNSSCLNTPPGNYTCVCPVGQTGDGRKEGGCRLSDGNAYPVVPTVLGVGTAFIVLFVGIISFSIYQKRKLTKLKEKFFRQNGGSILEQKLLQRKGSSQIANIFKENELRKATNNYDESFIIGRGGFGTVFKGELDNNRIVAIKKSKTIDESQIEQFINEVDVVSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLSDFIHKEDKVNNTTWKIRLKIAAEVAGALSYLHSAASIPIIHRDVKSDNILLDGTNTAKVADFGASRLVPLDQTEVATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGERPFSFGKPEERRSLAMHFLSCLKKDNLFEVIQEGMLNEENKQEIKEVAVLAAKCLRLRGEERPSMKEVAMELEGMRLMDKHSWINEDLNVEESRYLLHESSSSIYELGDSSKHGDIGYDSLKDHVLIALDDGR	751

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g00721	751	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2	15	720	-	-
	Tsu01g00721	751	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	541	553	IPR008271	GO:0004672\|GO:0006468
	Tsu01g00721	751	SMART	serkin_6	420	702	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g00721	751	Gene3D	Laminin	298	336	-	-
	Tsu01g00721	751	Pfam	Protein tyrosine and serine/threonine kinase	426	690	IPR001245	GO:0004672\|GO:0006468
	Tsu01g00721	751	Gene3D	Phosphorylase Kinase; domain 1	386	495	-	-
	Tsu01g00721	751	SMART	egf_5	246	293	IPR000742	-
	Tsu01g00721	751	SMART	egf_5	297	337	IPR000742	-
	Tsu01g00721	751	Gene3D	Laminin	245	297	-	-
	Tsu01g00721	751	ProSiteProfiles	EGF-like domain profile.	294	329	IPR000742	-
	Tsu01g00721	751	Pfam	Wall-associated receptor kinase galacturonan-binding	31	88	IPR025287	GO:0030247
	Tsu01g00721	751	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	15	720	IPR045274	GO:0007166
	Tsu01g00721	751	SUPERFAMILY	EGF/Laminin	292	330	-	-
	Tsu01g00721	751	Gene3D	Transferase(Phosphotransferase) domain 1	496	713	-	-
	Tsu01g00721	751	CDD	STKc_IRAK	426	693	-	-
	Tsu01g00721	751	ProSitePatterns	Protein kinases ATP-binding region signature.	426	449	IPR017441	GO:0005524
	Tsu01g00721	751	ProSiteProfiles	Protein kinase domain profile.	420	702	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g00721	751	SUPERFAMILY	Protein kinase-like (PK-like)	403	691	IPR011009	-
	Tsu01g00721	751	SMART	egfca_6	294	337	IPR001881	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g00721	Tsu-Chr1	6396054	6408094	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g00721	5	751	Receptor kinase-like Gene Family	AT1G21230	43.947	0.0	572

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Tsu01g00721		PK_Tyr_Ser-Thr	5.2e-53	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g00721	-		-	gmx:106795446	930.243