Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00716 ATGGAGAATAGTGACACTAAAACATGGAAGAACCATTGCATGAATGTTTTCTCAAAATCTGAAcgtgaagatgatgaagaagctcTTAAGTGTGTTGCAATGAAGAGAATCCTTACAAATGCATGCTATAGGAAAAGTGTAGAGaatgaagaaaaaggaaaagatgttgaCACTATGCAACTTGAATTGACTGAAAAAGAGGCTTTGTTAGAAAGACTTGTGAAAATAGCTGAAGAAGATAATGAAAAGTTCTTGTTGAAACTTAAGGAAAGAATGGACAGAGTTGGACTAGAACTTCCAACAATTGAAGTAAGATTTAAGGATATAAATGTGGAAGCACAAGTTTTTGTTGGAAGTAGAGCATTGCCTACATTACTTAACTTCTTTGTGAATGTCATTGAGGGATGTTTAAATAATCTTCATATAATTCCAAGTCCAAAGAAACAGTTGCATATACTTCAGAATGTTAGTGGAATCATAAAGCCTAAAAgGATGACATTGCTTTTAGGGCCACCTGGTTCTGGAAAGACCACTTTGCTTTTGGCCTTGGCTGGAAGACTTGGCAAAGATTTGAAGCAATCTGGGAGAGTAACATACAATGGAGAAGGACTAGAAGAGTTTGTGCCACAAAGAACATCTGCTTATGTAAGTCAATATGATAATCACATTGGAGAAATGACTGTTAGAGAAACACTAGCTTTCTCAGCAAGATGTCAAGGAGTTGGACAAAATTACGAAATGTTGACTGAACTACTGAGAAGAGAGAAGGAATCAAATGTTGAACCAGATCCTGATATTGATGCCTATATGAAAGAAGCAGCAATAGAAGGCCAGCAGAACAGTGTGGTCATTGACTACATTCTTAAGATTTTAGGACTTGAAGTTTGTGCTGACATAATGGTAGGAGACCAAATGATAAGAGGTATCTCAGGAGGGGAGAAAAAGCGACTTACTACCGGTGAGATGCTGGTTGGACCTATTAAGGTGTTGTTCATGGATGAAATATCAAACGGTTTGGACAGTTCGACAACTTTTCAGATAATCAACTCAATCAAGCAATCCATACATATTCTTAATGGAACTGCACTTGTGTCTCTGCTACAACCAGCACCAGAAACTTATGAACTATTTGATGATATTATACTTCTCACAGATGGGCAAATTGTGTATCAAGGACCACGAGAAAATGTACTTGAGTTTTTCGAATCGATCGGTTTCAAGTGTCCTGAAAGAAAAGGCGTTGCTGATTTCTTACAAGAAGTGACATCAAGAAAAGACCAATGGCAATATTGGGCGCGCAATGATGAACCTTATAACTTTGTCACTGTCAAGGATTTTGCTCGAGCCTTCGAATTATTTCACGTAGGTCAACAGCTTGGAGAAGAGATGGCCGATCCGTTTGACAAGACTAAGTTTCATTCAAATGCCTTGATCACAAAGAAATATGGTATTAACAAGAAGGAGTTACTAAGGGCTTGTGCTAGCAGAGAATTTTTGCTTATGAAGCGAAATTCGTTTGTCTACATATTCAAAGCCACACAACTTACATATTTAGCAACCTTGACAACAATGTTATTTCTACGACCAACGATGCACCACTCTACCATCACGGATGCAGAAACTTACATGGGAGCACTATTCTTCACAGTGACAGTAGCAATGTTCAATGGAATATCAGAGCTAAATATGACAATCATGAAACTTCCTATCTTTTACAAACAAAGAGATCTTCTTTTCTATCCTTCGTGGGCTTATTCTCTTCCACCATGGATCCTCAAAATACCAGTAACTCTCATAGAAGTTGCCATTTGGGAATGCATCTCTTACTACGGCATTGGCTATGATCGAGATATTGGAAGGTTTTTTAAACAGTACCTGGTAATCCTATGTATTAATCAGATGGCATCTGCGCTATTTCGGTTTATGGCAGCATTAGGAAGAGATATTGTAGTTGCAAACACATTTGGAACATTTTCATTACTTGCAGTTACTGTTTTGGGAGGATTTGTTATTTCAAGAGATGATGTGAACAAATGGTTTCTGTGGGGTTATTGGTCGTCGCCGTTGATGTATGGACAAAATGCTATAGCTGTGAATGAATTTCTTGGACATAGTTGGAGAAACGTTACTGCTACTAATTCCAATGAAACATTAGGAGTATTGATATTGAAATCTCGCGGATTTTTTCCACAAGCTTATTGGTATTGGATTGGAGTTGGAGCTTTGATTGGTtatgtttttctatttaattcTCTCTTCGCCTTGGCGCTGCACTATCTCAGTCCATTCAGAAAGGATCAAGCAGGTTTATCCCAAGAGAAATTGCAAGAGCGAAATGCTTCAACAGCTGAAGAGTTCATTCAATCGCAAACACAAAAGAGCTCACCTGGCAAGTCCTTTAGCTCCATCATATACAGTACTGTAAGAAAAGGCATGGTTCTTCCTTTTCAGCCTCTATCCCTCACTTTTGATgatatcaaatattttgttgaCATGCCACAGGCAATGAAAAGTCAAGGAGTTTGCGAGGATCGGCTCGAACTTTTGAAGGGTGTTAGTGGTGCTTTTAGACCAGGAGTACTAACAGCTCTTATGGGTGTAAGTGGTGCTGGAAAGACTACTCTAATGGATGTTTTAGCCGGGAGAAAAAATAGTGGATATATTGAAGGAAGCATCACAATATCTGGTTATCCAAAGAATCAAAAAACATTTGCTCGCATATCGGGATATTGTGAACAATCAGATATCCACTCACCTAACGTTACAGTTTATGAATCTTTGCTATATTCCGCATGGCTTCGTTTATCGCCTGAAGTTGATCGGAAAACTAGAAAGATGTTCATTGAGGAAGTTATGGAGCTTGTAGAGCTTAACTCATTAAGAGAAGCACTTGTTGGATTGCCAGGAGAGAATGGACTTTCAACCGAGCAACGCAAAAGGCTTACAATTGCAGTTGAACTTGTAGCAAATCCATCGATAATATTCATGGATGAGCCGACATCTGGCCTTGATGCTAGAGCAGCTGCAATTGTAATGAAAACAGTAAGGAATACCGTGGACACAGGACGTACTGTGGTTTGCACCATCCATCAGCCGAGTATAGATATATTTGATTCCTTTGATGAGCTTCTACTTCTGAAATCGGGAGGTGAGCAGATATTTGCCGGTCCAATAGGTGACCACGGTTCCGATCTGATCCAGTACTTTGAGGCTATTGAAGGAGTTCCTAAGATCAAAGATGGTTATAATCCTGCAACATGGATGTTGGAAGTTACATCAGCAGCAAAAGAGGCAAATCTTAAGGTCAACTTCACTGATGTGTACAAAAACTCAGAACTACACCGGAGAAATAAACAATTGATTCAGCAGCTTAGTGTTTCTTCTCAAGATTCAGAGGATCTATACTTCAATGCTCAGTATTCACAAACTTTTGTAGCACAATGTATAGCTTGTCTATGGAAACAACATTTATCATATTGGCGGAATACGTCTTATACAGCAGTTAGACTCCTATTTACCATGACAGGTTTATTGTTCGGCCTGATTTTTTGGGATGTTGGCTCGAAAACGAAAAAGGAACAAGATCTATTCAATGCAATTGGATCAATGTATGCTGCTGTTACCTTCATAGGAGTTGTAAACGGTGCCTCGGTGCAACCAATAGTAGCAATTGAGAGAACAGTTTTCTATAGAGAAAGAGCTGCAGGAATGTATTCAGCTTTACCATATGCTCTTGCACAGGTTGTTATAGAGCTTCCTCATATCTTGGTTCAAGCTCTTGTATATGGTATCATAGTATATGTCATGATGGGATTTGAGAGGACAGCATCAAAACTTTTGTGGAATCTCTTCTTCACATACTTTAGTTTCTTATACTATACCTACTATGGTATGATGACAATGGCCATAACTCCAAATCCACATGTTGCTGCCATATTGTCAACCTCATTCTATGCAATTTGGTGCCTTTTCTCAGGCTTCATCATTCCCTTATCTAGAATACCAATATGGTGGAAGTGGTACTATTGGATTTGTCCTGTTGCATGGACCTTGAATGGATTAGTGACTTCCCAATATGGAGACAGCATGGACACACTTGAGAATGATGAAAGTGTTAAAGAATTTGTGAGGAGTTATTTTGGTTTTGACTATGGCGATCTAGGAATGGTTGCAATTGTTGTGACTTGTTTCTCAGTGTTGTTTGCAATCATCTTCACCTTTGGGATCAAagcattcaatttccaaaaAAGATGA 4254 0.3801 MENSDTKTWKNHCMNVFSKSEREDDEEALKCVAMKRILTNACYRKSVENEEKGKDVDTMQLELTEKEALLERLVKIAEEDNEKFLLKLKERMDRVGLELPTIEVRFKDINVEAQVFVGSRALPTLLNFFVNVIEGCLNNLHIIPSPKKQLHILQNVSGIIKPKRMTLLLGPPGSGKTTLLLALAGRLGKDLKQSGRVTYNGEGLEEFVPQRTSAYVSQYDNHIGEMTVRETLAFSARCQGVGQNYEMLTELLRREKESNVEPDPDIDAYMKEAAIEGQQNSVVIDYILKILGLEVCADIMVGDQMIRGISGGEKKRLTTGEMLVGPIKVLFMDEISNGLDSSTTFQIINSIKQSIHILNGTALVSLLQPAPETYELFDDIILLTDGQIVYQGPRENVLEFFESIGFKCPERKGVADFLQEVTSRKDQWQYWARNDEPYNFVTVKDFARAFELFHVGQQLGEEMADPFDKTKFHSNALITKKYGINKKELLRACASREFLLMKRNSFVYIFKATQLTYLATLTTMLFLRPTMHHSTITDAETYMGALFFTVTVAMFNGISELNMTIMKLPIFYKQRDLLFYPSWAYSLPPWILKIPVTLIEVAIWECISYYGIGYDRDIGRFFKQYLVILCINQMASALFRFMAALGRDIVVANTFGTFSLLAVTVLGGFVISRDDVNKWFLWGYWSSPLMYGQNAIAVNEFLGHSWRNVTATNSNETLGVLILKSRGFFPQAYWYWIGVGALIGYVFLFNSLFALALHYLSPFRKDQAGLSQEKLQERNASTAEEFIQSQTQKSSPGKSFSSIIYSTVRKGMVLPFQPLSLTFDDIKYFVDMPQAMKSQGVCEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKNSGYIEGSITISGYPKNQKTFARISGYCEQSDIHSPNVTVYESLLYSAWLRLSPEVDRKTRKMFIEEVMELVELNSLREALVGLPGENGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMKTVRNTVDTGRTVVCTIHQPSIDIFDSFDELLLLKSGGEQIFAGPIGDHGSDLIQYFEAIEGVPKIKDGYNPATWMLEVTSAAKEANLKVNFTDVYKNSELHRRNKQLIQQLSVSSQDSEDLYFNAQYSQTFVAQCIACLWKQHLSYWRNTSYTAVRLLFTMTGLLFGLIFWDVGSKTKKEQDLFNAIGSMYAAVTFIGVVNGASVQPIVAIERTVFYRERAAGMYSALPYALAQVVIELPHILVQALVYGIIVYVMMGFERTASKLLWNLFFTYFSFLYYTYYGMMTMAITPNPHVAAILSTSFYAIWCLFSGFIIPLSRIPIWWKWYYWICPVAWTLNGLVTSQYGDSMDTLENDESVKEFVRSYFGFDYGDLGMVAIVVTCFSVLFAIIFTFGIKAFNFQKR 1417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00716 1417 Pfam ABC-2 type transporter 1147 1358 IPR013525 GO:0016020|GO:0140359
Tsu01g00716 1417 Pfam ABC-2 type transporter 489 701 IPR013525 GO:0016020|GO:0140359
Tsu01g00716 1417 PANTHER DRUG RESISTANCE TRANSPORTER-LIKE ABC DOMAIN PROTEIN 4 1417 - -
Tsu01g00716 1417 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 137 410 IPR003439 GO:0005524
Tsu01g00716 1417 CDD ABCG_PDR_domain2 818 1056 IPR034003 -
Tsu01g00716 1417 Gene3D - 837 1061 IPR027417 -
Tsu01g00716 1417 Pfam ABC-2 type transporter 368 419 IPR043926 GO:0140359
Tsu01g00716 1417 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 821 1073 IPR003439 GO:0005524
Tsu01g00716 1417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 844 1059 IPR027417 -
Tsu01g00716 1417 Pfam ABC transporter 849 1001 IPR003439 GO:0005524
Tsu01g00716 1417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 410 IPR027417 -
Tsu01g00716 1417 Pfam Plant PDR ABC transporter associated 706 768 IPR013581 -
Tsu01g00716 1417 Pfam ABC transporter 153 336 IPR003439 GO:0005524
Tsu01g00716 1417 SMART AAA_5 858 1050 IPR003593 -
Tsu01g00716 1417 SMART AAA_5 162 387 IPR003593 -
Tsu01g00716 1417 Pfam ABC-transporter N-terminal 35 128 IPR029481 -
Tsu01g00716 1417 PANTHER ATP-BINDING CASSETTE TRANSPORTER 4 1417 - -
Tsu01g00716 1417 Gene3D - 137 444 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00716 Tsu-Chr1 6274766 6298677 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00716 859 1033 Calmodulin-binding Proteins AT2G36910 26.087 3.91e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00716 K08711 - gmx:100800368 2302.32