Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00715 ATGGAAAGCAATGAAGTATCAAGAGTTGATAGTTTAAGAAGATCAAGTAGTTCTAACTTATGGAGGAACAATAGTATGGATGTTTTCTCAACTTCTGAAcgtgaagatgatgaagaagcactTAAATGGGCTTCTATTGAGAGACTTCCTACATATCTTAGGATTAGAAGAAGTATACTTAATAATCAAGAAGTTGATATCAAGAAACTTGGATTAACTGAGAGAAAAGTTCTTTTAGAAAGACTTGTGAaaattgctgaagaagataatGAAAAGTTTTTGTTGAAACTCAAGGAAAGAATGGAAAGAGTTGGACTTGATATTCCAACAGTTGAGGTAAGATTTGAGCATATTAATGTTGAAGCACAAGTTTATGTTGGAGGAAGAGCTTTACCTTCATTGCTTAACTTCTTTGTTAATGTCTTAGAGGGATTCTTAAATTATCTTCATATTGTTCCAAGTCCAAAGAAACCATTACATATTCTTCAAGATGTTAGTGGAATCATAAAGCCTCAAAGAATGACATTACTTTTGGGGCCACCAGGCTCTGGAAAGACCACTTTGCTTTTGGCCTTGGCTGGAAAACTTGCCACAGATTTGAAAAAATCTGGGAAAGTAACTTACAATGGAGAAGGACTAGAAGAATTTGTACCACAAAGAACATCAGCTTATATAAGTCAATATGATAATCACATTGGAGAAATGACTGTCAGAGAAACACTTGCTTTCTCTGCAAGATGTCAAGGGGTTGGACATAATTATGATATGTTGACTGAATTACttagaaaagagaaagaagcaAAGATTAAACCAGATCCTGATATTGATGCCTATATGAAGGCAGCAGCACTAGAAGGACAACACGCGAGCGTTGTAACTGACTATATTCTCAAGATTTTAGGACTTGAAATCTGTGCTGACATTATGGTAGGAGATGAAATGATAAGAGGTATCTCAGGAGGACAGAAAAAGAGAGTAACAACAGGTGAGATGCTGGTTGGACCTATAAAGGTGTTATTCATGGATGAAATATCAACTGGTTTGGACAGTTCAACAACTTTTCAAATAATCAGCTCAATAAGACAATCAATCCATATTCTGAATGGAACTGCACTTGTGTCTTTGCTACAACCAGCACCAGAAACTTATGAACTATTTGATGATATAATACTTCTAACAGATGGACAAATTGTGTATCAAGGACCAAGAGAAAATGTACTCGAGTTTTTTGAATCGGTCGGTTTCAAGTGTCCTGAAAGAAAAGGCGTTGCTGATTTCTTACAAGAAGTGACATCAAGGAAAGATCAATGGCAATATTGGGCAAATAGAGATAAACCTTATAGTTTTGTTACTGTCAAGGATTTTGCTGAAGCCTTTCAGTTATTTCACATTGGTCAAAAACTTGGAGATGAGCTAGCCAATCCTTTTGACAAGTCTAAAGGCCATGTAAATATCTTGACCACAAAGAAATATGGTGTTAACAAGAAGGAGCTTTTGAAGGCTTGTGCTAGCAGAGAATTTTTGCTTATGAAGCGAAATTCGTTTGTCCATATATTCAAAGTCACTCAACTTATTTATTTAGCTATCATGACAACAACATTGTTTCTAAGAACAAAGATGCATAAGAATACTGTGGAAGATGGAGGAACATACATGGGAGCACTATTCTTCACAGTGACAGTAGCAATGTTCAATGGAATATCAGAGCTAAATATGTCTATCATGAAACTTCCTGTCTTTTACAAGCAAAGGGACCTTCTTTTCTATCCTCCATGGGCTTATTCTCTTCCACCATGGATCCTCAAAATACCAATAACTCTCATAGAAGTTTTCATTTGGGAAGCCATTACTTACTATGCCATCGGCTATGATCCAAATTTCGTAAGGCTTTTGAAACAGTACTTGATAATCTTTTGCATTAACCAAATGGCATCTTCACTATTTCGGTTGATGGCAGCCTTAGGAAGGGATGTTGTAGTTGCAAGCACTGTAGGATCATTTGCATTACTAGTAGTTCTGGTTTTGGGAGGATTCGTGATTTCAAGAGAGGATGTGCACAAATGGTTTCTGTGGGGTTACTGGTCCTCACCATTGATGTATGGACAGAATGCTATAGCTGTGAATGAATTTCTTGGACATAGTTGGAGAAAGGTTAATCAAAATTCCAGTGAAACATTAGGAGTTTTGGTAATGAAAACTCGCGGCTTTTTCCCACAAGCTTACTGGTATTGGATTGGTGTAGGAGCATTGATTGGTTATGTTTTTCTATTTAACTTCTTGTTCACATTGGCTTTACAATATCTCAGTCCATTCAGAAAGGATCAAGCAAGGCTATCCGAGGAGAAATTGCTGGAGAGAGATTCTTCAACAGCTGAAGAGTTTATTCAGTTACCGAATCGAAAGAGAATTTCAGaaacaaagaTTGTAGAAGAAGAACTTATACAATCCAGATCTTTTTCTGCAAGAGTTGGTAAGGATAAAGCTAGTATAAGTGGAAGGAGAGGCATGGTTCTTCCTTTTCAACCTCTATCCATCACTTTCGATGAAATCAGATATGCTGTAGACATGCCTCAGGAAATGAAAAGTCAAGGAGTTTTCGAGGACCGTCTTGAACTTTTGAAGGGTATTAGTGGTGCATTTAGGCCTGGAGTTCTAACAGCTCTTATGGGTGTAAGTGGTGCTGGAAAGACTACTCTAATGGATGTTTTAGCCGGAAGAAAAACTGGTGGATATATCGATGGAAACATCACAATATCTGGTTATCCAAAGAATCAAAAAACATTTGCTCGCGTATCGGGATATTGTGAACAATTTGATATTCACTCACCCAATGTTACAGTTTATGAATCTTTGCTATATTCAGCATGGCTTCGGTTGCCACCTGAAGTTGATAAAGCTACGAGAAATATGTTTATTGAGGAAGTTATGGAGCTTGTAGAGCTTAACTCATTAAGAGAAGCACTTGTTGGATTGCCAGGCGAGAATGGACTTTCAACCGAACAACGTAAGAGACTTACAATTGCAGTTGAACTTGTAGCGAATCCATCGATAATATTCATGGATGAGCCAACCTCTGGCCTTGATGCTAGAGCAGCTGCAATTGTAATGAGAACGGTAAGGAACACCGTGGACACAGGACGTACTGTGGTTTGCACCATTCATCAGCCAAGTATTGACATATTTGACTCCTTCGATGAGCTTCTACTTATGAAATTGGGAGGTGAACAAATATATGCCGGTCCATTAGGCCGCCACTGTTCTCAGTTGATTCATTATTTTGAGGCTATTGAAGGAGTTCCTAAAATCAAAGATGGTTATAATCCTGCAACATGGATGTTAGAAGTTACATCAGCAGGAACAGAAGCAAATCTTAAGGTCAACTTCACTAATGTATACAGAAACTCGGAACTATACCGGAGAAACAAACAATTGATCCAGGAATTAAGTATACCTCCTCAAGATTCAAAGGATTTATACTTTGATACTCAATATACACAAACTATGTTGGCACAATGTAAAGCTTGCTTATGGAAACAACATTTATCATATTGGCGAAACACGTCGTATACAGCAGTTAGACTATTATTTACAACACTAATAGCTATCTTGTTTGGAATCATATTTTGGAACATTGGATTGAAAAGGAGAAAGGAACAAGATCTCTTCAATGCAATGGGATCAATGTATGCTTCTGTTATCTTTATTGGAGTACAAAATGGTGCCTCTGTGCAGCCTGTAATAGCTGTTGAGAGAACAGTCTTTTATAGAGAAAGAGCTGCTGGAATGTATTCTGCTTTGCCTTATGCAATAGCACagGTGATTATAGAGCTTCCCCACATCTTGGTTCAGACACTGATTTATGGTATTATTGTATATTCCATGATGGGATTGGATTGGACAACATCAAAATTCTTTTGGTATCTTTTCTTCATGTACTTCACTTTCTTGTACTATTGTTTCTATGGTATGATGACCATGGCTATCAGTCCCAACCCACATGTTGCTGCCATAATGTCTAGTGCATTCTATGCAATTTGGAGCCTTTTCTCTGGCTTTGTCATTCCCTTATCTAGAATACCAATATGGTGGAAGTGGTACTATTGGATTTGTCCAGTTGCATGGACCTTGAATGGATTGGTGACATCTCAATATGGAGACAACATGGAAAAACTTGAGAATGGTCAAAGGGTTGAAGAATTTGTGAGGAATTACTTTGGATTTAAACATGACTTCTTAGGAGTGGTTGCAATTGTTGTGGCTGGTTTCTCAGTGTTGTTTGCATTTATTTTCACACTTGGCATCAAAGCATTCAACTtccaaagaagatga 4329 0.3682 MESNEVSRVDSLRRSSSSNLWRNNSMDVFSTSEREDDEEALKWASIERLPTYLRIRRSILNNQEVDIKKLGLTERKVLLERLVKIAEEDNEKFLLKLKERMERVGLDIPTVEVRFEHINVEAQVYVGGRALPSLLNFFVNVLEGFLNYLHIVPSPKKPLHILQDVSGIIKPQRMTLLLGPPGSGKTTLLLALAGKLATDLKKSGKVTYNGEGLEEFVPQRTSAYISQYDNHIGEMTVRETLAFSARCQGVGHNYDMLTELLRKEKEAKIKPDPDIDAYMKAAALEGQHASVVTDYILKILGLEICADIMVGDEMIRGISGGQKKRVTTGEMLVGPIKVLFMDEISTGLDSSTTFQIISSIRQSIHILNGTALVSLLQPAPETYELFDDIILLTDGQIVYQGPRENVLEFFESVGFKCPERKGVADFLQEVTSRKDQWQYWANRDKPYSFVTVKDFAEAFQLFHIGQKLGDELANPFDKSKGHVNILTTKKYGVNKKELLKACASREFLLMKRNSFVHIFKVTQLIYLAIMTTTLFLRTKMHKNTVEDGGTYMGALFFTVTVAMFNGISELNMSIMKLPVFYKQRDLLFYPPWAYSLPPWILKIPITLIEVFIWEAITYYAIGYDPNFVRLLKQYLIIFCINQMASSLFRLMAALGRDVVVASTVGSFALLVVLVLGGFVISREDVHKWFLWGYWSSPLMYGQNAIAVNEFLGHSWRKVNQNSSETLGVLVMKTRGFFPQAYWYWIGVGALIGYVFLFNFLFTLALQYLSPFRKDQARLSEEKLLERDSSTAEEFIQLPNRKRISETKIVEEELIQSRSFSARVGKDKASISGRRGMVLPFQPLSITFDEIRYAVDMPQEMKSQGVFEDRLELLKGISGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQKTFARVSGYCEQFDIHSPNVTVYESLLYSAWLRLPPEVDKATRNMFIEEVMELVELNSLREALVGLPGENGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDSFDELLLMKLGGEQIYAGPLGRHCSQLIHYFEAIEGVPKIKDGYNPATWMLEVTSAGTEANLKVNFTNVYRNSELYRRNKQLIQELSIPPQDSKDLYFDTQYTQTMLAQCKACLWKQHLSYWRNTSYTAVRLLFTTLIAILFGIIFWNIGLKRRKEQDLFNAMGSMYASVIFIGVQNGASVQPVIAVERTVFYRERAAGMYSALPYAIAQVIIELPHILVQTLIYGIIVYSMMGLDWTTSKFFWYLFFMYFTFLYYCFYGMMTMAISPNPHVAAIMSSAFYAIWSLFSGFVIPLSRIPIWWKWYYWICPVAWTLNGLVTSQYGDNMEKLENGQRVEEFVRNYFGFKHDFLGVVAIVVAGFSVLFAFIFTLGIKAFNFQRR 1442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00715 1442 SMART AAA_5 882 1074 IPR003593 -
Tsu01g00715 1442 SMART AAA_5 171 396 IPR003593 -
Tsu01g00715 1442 Gene3D - 861 1094 IPR027417 -
Tsu01g00715 1442 Pfam Plant PDR ABC transporter associated 715 776 IPR013581 -
Tsu01g00715 1442 Pfam ABC transporter 162 344 IPR003439 GO:0005524
Tsu01g00715 1442 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 146 419 IPR003439 GO:0005524
Tsu01g00715 1442 Pfam ABC-2 type transporter 377 428 IPR043926 GO:0140359
Tsu01g00715 1442 PANTHER ABC-2 AND PLANT PDR ABC-TYPE TRANSPORTER FAMILY PROTEIN 10 1442 - -
Tsu01g00715 1442 Gene3D - 149 453 IPR027417 -
Tsu01g00715 1442 PANTHER ATP-BINDING CASSETTE TRANSPORTER 10 1442 - -
Tsu01g00715 1442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 868 1082 IPR027417 -
Tsu01g00715 1442 CDD ABCG_PDR_domain2 842 1080 IPR034003 -
Tsu01g00715 1442 Pfam ABC transporter 873 1025 IPR003439 GO:0005524
Tsu01g00715 1442 Pfam ABC-transporter N-terminal 67 137 IPR029481 -
Tsu01g00715 1442 Pfam ABC-2 type transporter 498 710 IPR013525 GO:0016020|GO:0140359
Tsu01g00715 1442 Pfam ABC-2 type transporter 1171 1383 IPR013525 GO:0016020|GO:0140359
Tsu01g00715 1442 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 845 1097 IPR003439 GO:0005524
Tsu01g00715 1442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 419 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00715 Tsu-Chr1 6261081 6270102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00715 883 1057 Calmodulin-binding Proteins AT2G36910 26.087 7.27e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00715 K08711 - gmx:100810505 2527.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00715 01 6261081 6270102 Tsu01g00715 01 6261081 6270102 ECH