Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00706 atgaatattGGATTAAAGTCTTATGATCATAATATCAAAAACAATGACAGTGAAATTCAAATCCTCAAAGACGATGCCGGCAGCCAATACAGTCTTACCGGAATCATTCTTCCACCTCTTGGTGCTGCCACCGCCAGGACCGAGCTCCCGCGTGGCATCATCTCCCCTAACAACCGTATTTATCAACAATGGTGCAAATTTCTGATGATATGGGTTTTCTACACTGCATGGGTGTGTCCTTTTGAATTTGCGTTTGTTAAGACATCAAAGGGTCCACTCATTTATGTAGACAGCATTgtgaatacatttttttttgttgacattgTTCTTACCTTCTTTGTTGCCTATCTTGACAAAACTACTTTTCTACTCGTCGGCGATCAAAAGAAAATTGCAAAGAGATATTTGGGATGCtggtttttctttgatttgatCTCTATCATTCCTTATGAAATGATTAAGAAAGACTTGCCAGCATCGCTCCAGACATATGGTTACTTCAATATTCTTCGCCTTTGGCGCCTTCATAGAGCCAGTGCTATGTTTTCGAGGTTAGAAAAGGACAGGAATTATAACTATTTTTGGGTGCGGTGTTTAAAACTTGCATGTGTAACGCTATTTTCGTTGCATGTAGCAGcgtgttttttctattttcttgcTACAGGACACAACCATAAAAAAGTTACATGGTTATCACTTGTTGCAAATGGTTCCAACCTAACTATATGGCAGGGTTATGTAACATCAATATATTGGTCCATAATGACTCTTTCATCAGTTGGTTACGGAGATTTGCATCCTGTTAGTACAGATGAAATggctttttgcattttttatacattattcaaTTTTGGACTTACTGCATATCTTATAGGAAACATGTCCAATTTGGTTGTTCATTGGACATACAGAACTAAGAGATATAGAGATACTGTTGAAGCTGCGTCGAATTTTGCTCAAAGGAATCACTTACCTAAACGTTTGCAAGATCAGATGTTTTCTCATTTTCATATGAAGTACAAAATAGATTTAGAAGGACTGGAGCAACAAGAAATAATTAGTACCCTTCCGAAAGCCATTCAGTCGAGCATCGCACATCACCGCTTCTTTGATGTTATCAAAGAAATATACTTGTTTAAGGGAGTGTCAAATGACCTACTATTTCAATTGGTGACAGAGTTGAAGGCTGAGTTTTTTCCTCCGAGAGAAGATATAATCTTGCAGAATGAATCACCAACAGACTTTTATATATTGACCGTTGGAGCTGCTTTTCATGAAATAAAGGCAAATGAGGTTTTTGGAGAAATAGGAGTTCTATGTTACAGGCCACAATTTTTTACAGCTCGGACCAAGCTATTAAGCCAGATCTTGCGTTTGAGTCGAACATCATTTCTAAACCTTGTTCATGACAATGTTGAAGATGGAACAATTATCATGAACAATTTTCTCAAGCATGTGCACGTTTTAAGTTTAATGCATCCGATCATGGTAGGGGTTATGGCTGACATAGAGAAATTGTTGTCAACAGGCAAAATGGATTTGCCTATAAGTTTAGTATTTGCTACTAACAAAGGTGATGATATGTTGTTGCATCACTTGCTGAAAAAAGGCTCGGATCCAAACGAAGTGGATCACAAAACTGGAAAGACACCACTGCATGTTGCAGCTTCTCAAGGCAGTGATCATTGTGTGGTTTTGCTTCTTGAATTTGGAGCTGATCCCAACATACAAGATTTTGAAGGAAATATATCACTATGTGAAGCAATGAAAGGAGGGCATGAATTAGTGAAAAAACTACTTATAGACAATGGTGCAGATATGTATTCCGCTAATGTGGCTCCTTTAGCAATCTTCGCTATCGAGAAAAATGACATTCAATTGCTAAAAGATATTGTGAAACTTGGTGGTGATTTTGTGACAAACTCCACAAAAGAAGGAACAACTGCACTTCATGCTGCTGTATGTGAAGGAAATGTTGAAATAGTTAAGTTTCTTGTAGAACAAGGAGCAGATATCGATAAGCAAGATAATCTTGGTTGGACTCCGAGAACTTTAGCAGATCATCAATGCCATGAAgagataaataatatgtttaaagaaattgaacaaGATGATAAAATTCCATATGTTATTACTCCAAATAATAATGGAGGGTCAGTTATTTCAAAGTCTTACAGTGACCCTTCTATGGCTAGGCCTCGAGGTGGTAGCGTCCGACCTAATCAAGAGTTGACATTGTTGAATGATCATCAAAGAAGAAGGGTTAGCCCTTATAGGAATCCCGTTTTTGGAATGATTACAGCTGCTAATCGAGATAAATATGGTTTTCCTCCATCTCAAGACAGTCACACTACAACTTCTACACGTGCGAATGAATTGCCAATTAGAGTAGTTCTTAGTCGcgaagaaaaaaacaaacatccTAAAAGGCTTGTTTTTCTACCACAGTCCCTTCAAGAGCTGCTAGATGTTGGTGCTCAAAAGTTTGGCTTCTCTCCTTCTAAAGTTTTGACTGAAGACGGAGCTGAAGTTGAAGACATTAACTTGATTAGAGAGGGTGATCATCTTGTTCTTGTATGA 2580 0.3616 MNIGLKSYDHNIKNNDSEIQILKDDAGSQYSLTGIILPPLGAATARTELPRGIISPNNRIYQQWCKFLMIWVFYTAWVCPFEFAFVKTSKGPLIYVDSIVNTFFFVDIVLTFFVAYLDKTTFLLVGDQKKIAKRYLGCWFFFDLISIIPYEMIKKDLPASLQTYGYFNILRLWRLHRASAMFSRLEKDRNYNYFWVRCLKLACVTLFSLHVAACFFYFLATGHNHKKVTWLSLVANGSNLTIWQGYVTSIYWSIMTLSSVGYGDLHPVSTDEMAFCIFYTLFNFGLTAYLIGNMSNLVVHWTYRTKRYRDTVEAASNFAQRNHLPKRLQDQMFSHFHMKYKIDLEGLEQQEIISTLPKAIQSSIAHHRFFDVIKEIYLFKGVSNDLLFQLVTELKAEFFPPREDIILQNESPTDFYILTVGAAFHEIKANEVFGEIGVLCYRPQFFTARTKLLSQILRLSRTSFLNLVHDNVEDGTIIMNNFLKHVHVLSLMHPIMVGVMADIEKLLSTGKMDLPISLVFATNKGDDMLLHHLLKKGSDPNEVDHKTGKTPLHVAASQGSDHCVVLLLEFGADPNIQDFEGNISLCEAMKGGHELVKKLLIDNGADMYSANVAPLAIFAIEKNDIQLLKDIVKLGGDFVTNSTKEGTTALHAAVCEGNVEIVKFLVEQGADIDKQDNLGWTPRTLADHQCHEEINNMFKEIEQDDKIPYVITPNNNGGSVISKSYSDPSMARPRGGSVRPNQELTLLNDHQRRRVSPYRNPVFGMITAANRDKYGFPPSQDSHTTTSTRANELPIRVVLSREEKNKHPKRLVFLPQSLQELLDVGAQKFGFSPSKVLTEDGAEVEDINLIREGDHLVLV 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00706 859 SUPERFAMILY Ankyrin repeat 509 700 IPR036770 -
Tsu01g00706 859 Pfam Ankyrin repeats (3 copies) 588 676 IPR002110 GO:0005515
Tsu01g00706 859 PANTHER POTASSIUM CHANNEL AKT1 8 858 IPR045319 GO:0005249|GO:0006813
Tsu01g00706 859 ProSiteProfiles cAMP/cGMP binding motif profile. 378 485 IPR000595 -
Tsu01g00706 859 ProSiteProfiles Ankyrin repeat region circular profile. 547 578 - -
Tsu01g00706 859 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 8 858 - -
Tsu01g00706 859 ProSiteProfiles Ankyrin repeat profile. 547 579 IPR002110 GO:0005515
Tsu01g00706 859 PRINTS Ankyrin repeat signature 661 675 IPR002110 GO:0005515
Tsu01g00706 859 PRINTS Ankyrin repeat signature 548 563 IPR002110 GO:0005515
Tsu01g00706 859 Pfam Ankyrin repeats (many copies) 540 582 IPR002110 GO:0005515
Tsu01g00706 859 Gene3D - 62 299 - -
Tsu01g00706 859 ProSiteProfiles Ankyrin repeat region circular profile. 645 677 - -
Tsu01g00706 859 CDD CAP_ED 378 479 IPR000595 -
Tsu01g00706 859 ProSiteProfiles KHA domain profile. 796 859 IPR021789 -
Tsu01g00706 859 PRINTS EAG/ELK/ERG potassium channel family signature 246 263 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu01g00706 859 PRINTS EAG/ELK/ERG potassium channel family signature 74 81 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu01g00706 859 PRINTS EAG/ELK/ERG potassium channel family signature 97 107 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu01g00706 859 PRINTS EAG/ELK/ERG potassium channel family signature 290 299 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu01g00706 859 PRINTS EAG/ELK/ERG potassium channel family signature 108 117 IPR003938 GO:0005249|GO:0006813|GO:0016020
Tsu01g00706 859 SMART ANK_2a 513 542 IPR002110 GO:0005515
Tsu01g00706 859 SMART ANK_2a 645 674 IPR002110 GO:0005515
Tsu01g00706 859 SMART ANK_2a 547 576 IPR002110 GO:0005515
Tsu01g00706 859 SMART ANK_2a 580 609 IPR002110 GO:0005515
Tsu01g00706 859 SMART cnmp_10 378 483 IPR000595 -
Tsu01g00706 859 Gene3D Helix hairpin bin 304 365 - -
Tsu01g00706 859 Gene3D Jelly Rolls 366 487 IPR014710 -
Tsu01g00706 859 Pfam Ion transport protein 63 303 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu01g00706 859 Pfam KHA, dimerisation domain of potassium ion channel 796 858 IPR021789 -
Tsu01g00706 859 SUPERFAMILY Voltage-gated potassium channels 57 299 - -
Tsu01g00706 859 ProSiteProfiles Ankyrin repeat profile. 645 677 IPR002110 GO:0005515
Tsu01g00706 859 SUPERFAMILY cAMP-binding domain-like 304 484 IPR018490 -
Tsu01g00706 859 Gene3D - 515 700 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00706 Tsu-Chr1 6202535 6206910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00706 15 858 Ion Channels AT2G25600 51.564 0.0 861
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00706 K21867 - gmx:100809960 1019.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00706 01 6202535 6206910 Tsu01g00706 01 6202535 6206910 ECH
Tsu01g00706 01 6202535 6206910 Tsu07g00618 07 4919217 4923793 PCT