Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00702 ATGATGGATTCTCCAGAACCTTCtaagatcaacaacaacaacaacagcagcaaTTGTTCTCTCTCCACTCTCAGTGCCGCCACTGAATCTCCTCAAGTTCAAGAATCTCCCTTTTTGAGATTTGTCAACACTCTATCTCCAATAAAGCCCGTCAAGGCCTCTCATGCAACACATGGGTTTCTTGGACTCAATTCTCCTCCTCTTGTATTCAAGTCGCCGCGTATTAGTGATCACCACCGTGAAACACAATACTTGGAAAGGCCTCAAGGTAGCAATTTGTCCAGTGGAAAAATATCTCAAAGTGACATCGGAGACAACAATCTTGGTGAAGCTCATCGTGATTTGAAGAAATTGACTTCTCAGCAGTCATTTTCAGAGGGGTTTATAACAGATGCCCAGAAGGAATTTGGTGTCAAGAATGATGCGAATAACCAAAGCTGTAGTCCTCCACAATCTGTTGAGGAATATTTGGCTGATCCCGGGGAGGATCAATTGTTTCCAATCAACCCAGAAACGGAACAATGTACTGATGCAGGTGGGTCATCCTTAACTGAGTCAGAGAGAGctatattaaaatttgacagGAGTGATGGTCCCAGTAACAGAGCAGAAGAACTTTTGCCTCTGTTAGAGGAATCTAATAGGGTTCATCCAGAAAGGCTAGCGTATGTCGAAAATCCTTCAATGGTAAAAGGGGAGAAAAATGGTGCTGAATTAGTTTCTCAAGAGCACATAAACTTAGAGTCGAGTGCAGGTGCGGATGCTTCTGATAAAAAATATTGCCATGATTCACTTCCCCAGTGTGCAGGAAATGATCGGCGACATCATAGTGACTGTACACCTCAATTGATGCCTGATCCTATCCAGGATGTTAAAGAATTCGAAAATTCCAATGAGATGGTGTCAACCTCACAAGTAAATTCAGAGAATATCCCACAAGATGGCTCTGAGGCTAGTCTAAAGTATCATGGCTTCCGTAGACGCTGCCTACAATTTGAtgaagcttcttccattgctctTGGGAGTAACAAGTCTCATGTGAAAATGAATGCAACTTCAAGCAACATGAAAATGGTTCTTGTGGCAGGTTCCAAGCCACCAGGCATTGGGTTGCATTTAAATAGCATTGTAAATGCAATGCCGCCTAGTCGTGCTTCAACTTCAGGTGTGAGATTATCAGATGGTTTACAGGGGATACAATCCAAACCTTCTATAAGTCTGCGTAAAGTGGAAAGTGTGACAAGATCCTCAGTTCCTTCCAATATGGATGGTCAATCGTTTATTGATACTAGAAATGAGAGCCATGAAACTGATGCTTCAGTAGTTGCAGATTCTTTCATTTCCGAGTCTCCTATCTTGAAAGAATCCATCGACCTATATCCGGCAAATACACATGATAAGAAGAGAGTTAGCCCTACAGAAGTTGAAAATACTGAAGAATCAAACCATCGCAGCACCTCCAAGAAAAAGAAGAAAACAAGTACTGATGATGCCAGTGGCCCTAAGAGTTGCAACTGTAAGAAGAGTAAATGTTTAAAACTTTATTGTGATTGTTTTGGTGCTGGACTCTTCTGTGGCGACGATTGTGCTTGCGAAAGCTGTGGCAATAGAGTAGAATTTCAGGAGACAGTTGTTGAGACAAAGCATCATATTGAATCTCGTAATCCACAGGCATTTGCTCCCAAGATTGTACTGTGTGCGGCCGATGTTCCACCAAATAATATGGAAGATGTGAATATGACAACACCGGCATCAGCGAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAAAGTGTACTAAAAAATATTGTGAATGTTTTCAGGCTAACGTTGGATGCTCGACTGGATGTCGATGTGATGGATGTATGAATGCTTTTGGCAAGAGAGAAGATTTTGTGGCAATGGAACTTGCTTTGAGCAAAGAGAGGGAGAGCAACATTATTGAAGAAGGGTTGGATGACACACTTCACAATAAACAGAAAATGGTGACAATTAGGACAGGCTTGTTTCACCCAGCAAATCACCTCTCACCTGTAACACCATTGTTGGAATGCTCTGACCAAGGCAAGCAGGCTGCAAAGTCCATAGTTGCTTCTGCAAGTTGGACTAAATCTTCCAAAAAGTCACGGAGCAGTCTTGCACATTCGGAGTCTAATAATTCTCAAAAGAATGCACCTACAGGTCCTTCATCTAAAGATAATGAGTGGTTAGATCTTCCACCATACCAACTCTCCAATAGATGCGGTATTCGCCAATTATCTGGGGGTTCTCTTCGTTGGCGCGGTAGTTCACCAATTACCCCAAATGCTTCCAAAGATGATGAATCAGACAGCAAGCTCTTTGACATTCTAGAAGATGAAACACCTGATGTATTGAAGGAAGCTTCAACTCCCATAAAGTCCGTGAAAGCAAATTCGCCGATCCAAAAGAGAGTTTCTCCTCCACAGAATCATCTACTTCGGATTGGATCAAGCACTTCAGGTGGTTTGAAAAGTGGCAGGAAATTTATATTGCAATCTGTTCCTTCTTTTCCGCCGTTAACCCCTTGTGCTGATTCCAAAGCTATTCGCACTGCCAATGAGGATTCGGGTAACAGCGCAGATAAATTGACATAA 2616 0.414 MMDSPEPSKINNNNNSSNCSLSTLSAATESPQVQESPFLRFVNTLSPIKPVKASHATHGFLGLNSPPLVFKSPRISDHHRETQYLERPQGSNLSSGKISQSDIGDNNLGEAHRDLKKLTSQQSFSEGFITDAQKEFGVKNDANNQSCSPPQSVEEYLADPGEDQLFPINPETEQCTDAGGSSLTESERAILKFDRSDGPSNRAEELLPLLEESNRVHPERLAYVENPSMVKGEKNGAELVSQEHINLESSAGADASDKKYCHDSLPQCAGNDRRHHSDCTPQLMPDPIQDVKEFENSNEMVSTSQVNSENIPQDGSEASLKYHGFRRRCLQFDEASSIALGSNKSHVKMNATSSNMKMVLVAGSKPPGIGLHLNSIVNAMPPSRASTSGVRLSDGLQGIQSKPSISLRKVESVTRSSVPSNMDGQSFIDTRNESHETDASVVADSFISESPILKESIDLYPANTHDKKRVSPTEVENTEESNHRSTSKKKKKTSTDDASGPKSCNCKKSKCLKLYCDCFGAGLFCGDDCACESCGNRVEFQETVVETKHHIESRNPQAFAPKIVLCAADVPPNNMEDVNMTTPASARHKRGCNCKRSKCTKKYCECFQANVGCSTGCRCDGCMNAFGKREDFVAMELALSKERESNIIEEGLDDTLHNKQKMVTIRTGLFHPANHLSPVTPLLECSDQGKQAAKSIVASASWTKSSKKSRSSLAHSESNNSQKNAPTGPSSKDNEWLDLPPYQLSNRCGIRQLSGGSLRWRGSSPITPNASKDDESDSKLFDILEDETPDVLKEASTPIKSVKANSPIQKRVSPPQNHLLRIGSSTSGGLKSGRKFILQSVPSFPPLTPCADSKAIRTANEDSGNSADKLT 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00702 871 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 2 856 IPR044522 GO:0003700
Tsu01g00702 871 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 502 537 IPR005172 -
Tsu01g00702 871 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 590 625 IPR005172 -
Tsu01g00702 871 MobiDBLite consensus disorder prediction 757 771 - -
Tsu01g00702 871 MobiDBLite consensus disorder prediction 460 497 - -
Tsu01g00702 871 MobiDBLite consensus disorder prediction 707 738 - -
Tsu01g00702 871 SMART CXC_2 587 628 IPR033467 -
Tsu01g00702 871 SMART CXC_2 499 540 IPR033467 -
Tsu01g00702 871 MobiDBLite consensus disorder prediction 87 108 - -
Tsu01g00702 871 MobiDBLite consensus disorder prediction 1 33 - -
Tsu01g00702 871 MobiDBLite consensus disorder prediction 407 434 - -
Tsu01g00702 871 MobiDBLite consensus disorder prediction 757 777 - -
Tsu01g00702 871 MobiDBLite consensus disorder prediction 87 106 - -
Tsu01g00702 871 ProSiteProfiles CRC domain profile. 500 627 IPR005172 -
Tsu01g00702 871 MobiDBLite consensus disorder prediction 407 428 - -
Tsu01g00702 871 MobiDBLite consensus disorder prediction 707 731 - -
Tsu01g00702 871 MobiDBLite consensus disorder prediction 458 503 - -
Tsu01g00702 871 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 2 856 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00702 Tsu-Chr1 6162977 6168838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00702 311 849 CPP Transcription Factor Family AT3G22780 32.374 2.98e-58 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Tsu01g00702 TCR 8.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00702 K21776 - gmx:547664 756.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00702 01 6162977 6168838 Tsu01g00702 01 6162977 6168838 ECH