Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00694 ATGGTACAAAGTAACAAGTTTAGAGGAGTTAGACAACGTCAGTGGGGCTCTTGGGTCTCAGAAATTCGTCATCCTTTACTGAAGAGAAGAGTATGGCTAGGTACATTTGAGACAGCAGAGGCAGCAGCCAGAGCATATGATGAAGCAGCAATTTTAATGAATGGAAAAAATGCCAAAACCAATTTCCCTATACCAAAAGATAATCAAACACAAGATGCCAATTCCATAACACCAAATTtctatgataataataataataactcttTCCTCTCTCCAAATTCTCTTTCTGATATAATCAACAAAAAGCTTAGAAAGTGTTGCAAAAAACAATCTCCATCACTCACTTGTTTGAGGCTTGATGCTGATAATTCTCATATAGGAGTGTGGCAAAAAGGAGCAGGACCACATTCTGATTCTAATTGGATCATAAGGGTTGAGCTAGGAAAGAAATTACATGAAGAGGGTCATGATGAATCAAATCATGTGAGATCATTAGCAGTACCTAATAATAGTACTATTGATGATTATGCTAAGAAAAATGGGATAGATCATGAAGATGATATTGTTACCATGCAGATGATTGAAGAACTACTTAATTGA 600 0.35 MVQSNKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDEAAILMNGKNAKTNFPIPKDNQTQDANSITPNFYDNNNNNSFLSPNSLSDIINKKLRKCCKKQSPSLTCLRLDADNSHIGVWQKGAGPHSDSNWIIRVELGKKLHEEGHDESNHVRSLAVPNNSTIDDYAKKNGIDHEDDIVTMQMIEELLN 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00694 199 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Tsu01g00694 199 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Tsu01g00694 199 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Tsu01g00694 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 199 - -
Tsu01g00694 199 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Tsu01g00694 199 CDD AP2 6 64 IPR001471 GO:0003700|GO:0006355
Tsu01g00694 199 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Tsu01g00694 199 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Tsu01g00694 199 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Tsu01g00694 199 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00694 Tsu-Chr1 6108943 6110341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00694 1 199 AP2-EREBP Transcription Factor Family AT5G25390 57.214 4.34e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu01g00694 AP2 2.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00694 - - gmx:100784305 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00694 01 6108943 6110341 Tsu01g00694 01 6108943 6110341 ECH
Tsu07g00649 07 5127241 5128392 Tsu01g00694 01 6108943 6110341 ECH
Tsu04g03954 04 48237936 48239387 Tsu01g00694 01 6108943 6110341 ECH