Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00670 ATGGGAAAACCAGCTGGAAAAAAGAAGGAACATCATGAATCACCAAaagcaaacaacaacaacaacaagaacaacaaaggtggtggtgttggtggtggttacgaacattcatcatcatcaaaagtATTAGACGACGATACAGCGATGTTTATCAACATGTCACAAGAGTTAAGAGAAGAAGGTAACAAacttttttaccaaaaaaaagacAATGAAGGTGCTATGTTAAAGTACGAAAAAGCCCTTAAACTTCTTCCCAAAAATCATATAGATGTTGCACATCTTCATACAAATATGGCTATGTGTTATATGCAATTGGGTCTTGGTGAGTATCCTAGAGCAATCAATGAGTGCAATCTTGCTTTACAGGTTTCGCCGAGGTATAGTAAAGCTCTTTTAAAAAGAGCTAAGTGTTATGAATCGTTGAATCGGGTAGATTTGGCTATGAGAGATGTTAGGGTTGTTTTAAATGCTGAACCGAATAATTTGACTGCGTTGGAGATTCTTGATAGTTTGAGGATTACTATGGATGAGAAAGGGATTACGATCGATGAAACTGAGATTGCTTTGGCTGCTTTGCAGCAGGTGGAAGCACCTGCTGCGAGGTTTAGGAAAGTTGTTAGGGAGAAGATtactaagaagaagaaaggacATAAAGGGGAAAGCGAGGAGGATCGGAAAAATAAGAATGTTGTTGAGGTGAAGGGTAAAGATTCTATGGATAAGGATAGTAGAGAAGTTGTTACGGAAGATAAAACGGTTACTAGGACTGTGAAGTTGATATACGGTGAGGATATTAGGTGGGCGCAGTTGCCTGTGAATTGTAGTATGAAGTTGGTGAGGGATGTGATAAGGGATAAGTTTCCGGGGTTAAAGGGTGTTCTTGTGAAGTATAAGGATAGGGAAGGTGATTTGGTTACTATTACTACTACTGCTGAGTTGAGGTTAGCTGAGGGTTGTCATGTGCTTGGTTCGATTCGGTTGTATATTACACAGGTGGATTTGGATAAGGAGCCTCGTTATGATGATAAGCCAAGTAGTGGTGAGGTCAGAAGGGAGAATGGGGTTGGAGGAGACAGGACTAATAAGATGCTTACTGTGGAGGATTGGCTTGTTCAGTTTGCGAGGCTGTTTAAGAATCATGTTGGGTTTGATTCTGATTCGTATCTGGATATTCATGAGGTTGGGATGAAGCTATATTCGGAGGCAATGGAGGATGCAGTGACGAGTGATGGTGCTCAAGAGCTGTTTGATATTGCTGCGGATAAGTTTCAAGAGATGGCTGCTTTGGCTTTGTTTAACTGGGGGAATGTTCACTTGTCTAAGGCGAGGAGGCAAGTGCCTTGTCAGGAGGAAGGGTCGACAGATGCTTCTTTCGAGCATGTTAAAGCTGCGTATGAGTGGGCTAAGAAGGAGTACAGGGAAGCGGAAATGAGATACGAAGAATCTGTGAAAATCAAACCGGACTTTTATGAGGGACTCCTTGCTCTTGGGTATCAGCAGTTTGAGCAAGCAAAGCTATGCTGGGGTTATTTACTTGCAACCAATAAGGAGTTCGAAGTTGGCCCTTTTGAGGAGGTTCTACAGCTCTATAACAAGGCAGAGGACGGCATGGAGAGAGGGATGTTGATGTGGGAGGAGCTTGAGGAACAGCGCTTGAATGGACTATCTAAATTAGATAAATATAATGCACAGTTACAGAAAATGGGTTTGCAAGGTCTTTTCAGGGATGTTTCTTCTGAGGAAGCTGATGAGCAGGCTTCAAAGATGAAGATACAGATATATCTTTTATGGGGTACCTTATTGTACGAGCGTTCTGTTGTGGAGTTTAAGCTAGGACTACCAACATGGGAGGAATGTTTGGAGGTTGCAGTTGAAAAGTTTGAACTAGCTGGAGCTTCTACAACAGACATTGGTGTTATGATAAAGAACCATTGTTCTAATGAAACAGCAATGGAAGGGTTCAGAATTGATGACATAGTGCAAGCATGGAATGAGATGTATGATGGGTGGCAGTTTGATGTTCCAACTTTCCGACTTGAACCATTGTTTCGTCGGCGTGTTCCAAGACTCAATTACATCTTGGAGCAATTTTAA 2097 0.3968 MGKPAGKKKEHHESPKANNNNNKNNKGGGVGGGYEHSSSSKVLDDDTAMFINMSQELREEGNKLFYQKKDNEGAMLKYEKALKLLPKNHIDVAHLHTNMAMCYMQLGLGEYPRAINECNLALQVSPRYSKALLKRAKCYESLNRVDLAMRDVRVVLNAEPNNLTALEILDSLRITMDEKGITIDETEIALAALQQVEAPAARFRKVVREKITKKKKGHKGESEEDRKNKNVVEVKGKDSMDKDSREVVTEDKTVTRTVKLIYGEDIRWAQLPVNCSMKLVRDVIRDKFPGLKGVLVKYKDREGDLVTITTTAELRLAEGCHVLGSIRLYITQVDLDKEPRYDDKPSSGEVRRENGVGGDRTNKMLTVEDWLVQFARLFKNHVGFDSDSYLDIHEVGMKLYSEAMEDAVTSDGAQELFDIAADKFQEMAALALFNWGNVHLSKARRQVPCQEEGSTDASFEHVKAAYEWAKKEYREAEMRYEESVKIKPDFYEGLLALGYQQFEQAKLCWGYLLATNKEFEVGPFEEVLQLYNKAEDGMERGMLMWEELEEQRLNGLSKLDKYNAQLQKMGLQGLFRDVSSEEADEQASKMKIQIYLLWGTLLYERSVVEFKLGLPTWEECLEVAVEKFELAGASTTDIGVMIKNHCSNETAMEGFRIDDIVQAWNEMYDGWQFDVPTFRLEPLFRRRVPRLNYILEQF 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00670 698 MobiDBLite consensus disorder prediction 1 40 - -
Tsu01g00670 698 ProSiteProfiles PB1 domain profile. 255 333 IPR000270 GO:0005515
Tsu01g00670 698 SMART tpr_5 93 128 IPR019734 GO:0005515
Tsu01g00670 698 SMART tpr_5 54 88 IPR019734 GO:0005515
Tsu01g00670 698 SMART tpr_5 457 490 IPR019734 GO:0005515
Tsu01g00670 698 SMART tpr_5 129 162 IPR019734 GO:0005515
Tsu01g00670 698 CDD PB1 257 330 - -
Tsu01g00670 698 Gene3D - 248 332 - -
Tsu01g00670 698 MobiDBLite consensus disorder prediction 216 236 - -
Tsu01g00670 698 Gene3D Tetratricopeptide repeat domain 52 178 IPR011990 GO:0005515
Tsu01g00670 698 SUPERFAMILY CAD & PB1 domains 250 336 - -
Tsu01g00670 698 SMART PB1_new 255 333 IPR000270 GO:0005515
Tsu01g00670 698 PANTHER PROTEIN PHOX4 1 697 - -
Tsu01g00670 698 SUPERFAMILY TPR-like 52 174 IPR011990 GO:0005515
Tsu01g00670 698 Pfam PB1 domain 255 331 IPR000270 GO:0005515
Tsu01g00670 698 MobiDBLite consensus disorder prediction 1 17 - -
Tsu01g00670 698 MobiDBLite consensus disorder prediction 214 236 - -
Tsu01g00670 698 PANTHER PROTEIN CLMP1 1 697 IPR044517 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00670 Tsu-Chr1 5931726 5936296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00670 44 162 Calmodulin-binding Proteins AT3G25230 30.469 1.78e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00670 - - vra:106765155 997.653