Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00664 ATGGCTTACCATAATCAGCATCTTTCACAAGAACTACCACCAATCCACCATTTCACAGACCAaactaataacaacaacaacacgtTCCGTTCCATATTACCAGACTCACCCGACCCTAACTCCAAACCTGATTCCGACCCTAACCAACTCCAAACCACACCTAATTGGCTTAACAACGCTCTCCTTCGTACCCACTACACCGACAACAATAACAACCAACACAACAATAACGACGTCACTAACGACGTTAACAACGAAACCAACGTTAACGGAGGTTCTAATTTTCTTAATCTTCAAACGGCTACTGACTCCGCCGCAGTTCAAACCTCCGGTCAATGGCTTTCCCGGTCGATTCTCCACCGGCATCACGGTGAAGTCATCGACGATGTCTCCGTCTCCGCCGCCATCGGCGGTGGGGATTCAGTAGGCGATTTAAAAGGAGAAGGTCTCTCCGGGAAGGTCGGAGACGGCGGTGGAGGATTAGTGAACTGGCAGACGGGGAGGTTGAAGGCGGAGATTATGGCACATCCGTTGTATGAACAGTTGTTGTCGGCACACGTGGCGTGTTTGAGAATTGCAACGCCGGTGGATCAGTTACCGAGAATTGATGCTCAGTTGGCACAGTCACAGAATGTAGTCGCCAAGTATTCGGCGTTTGGACAGAACATCGTCGGAGTAGATGACAAAGAACTTGACCACTTCATGTCACACTATGTTTTACTGCTGTGTTCTTTCAAAGAACAATTGCAACAACATGTTCGCGTTCATGCAATGGAAGCAGTCATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGTCTAAcagGAGTTTCACCTGGAGAAGGTACGGGGGCAACAATGTCCGAAGACGAAGATGAACAAGTAGACAgtgatgcaaatatatttgatggTAGTTTCGATGGCGGTGCAGATAACATGGGATTTGGTCCTCTTGTACCAACAGAAAATGAAAGATCCCTAATGGAACGCGTAAGACAAGAGCTAAAGCATGAATTGAAACATGGTTATAAGGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCCGGTGACACTACCTCTGTCCTTAAGGCTTGGTGGCAATCGCATTCCAAATGGCCTTATCCTACAGAGGAAGATAAGGCAAGGTTGGTGCAAGAAACTGGTTTGCAATTAAAGCAGATTAATAACTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCAACTGTCTTGAAGAGCAAGCGCAAAAGGTCTCAAAACTAG 1305 0.4475 MAYHNQHLSQELPPIHHFTDQTNNNNNTFRSILPDSPDPNSKPDSDPNQLQTTPNWLNNALLRTHYTDNNNNQHNNNDVTNDVNNETNVNGGSNFLNLQTATDSAAVQTSGQWLSRSILHRHHGEVIDDVSVSAAIGGGDSVGDLKGEGLSGKVGDGGGGLVNWQTGRLKAEIMAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGQNIVGVDDKELDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSEDEDEQVDSDANIFDGSFDGGADNMGFGPLVPTENERSLMERVRQELKHELKHGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRSQN 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00664 434 SMART KNOX1_2 167 211 IPR005540 GO:0003677|GO:0005634
Tsu01g00664 434 SMART HOX_1 356 421 IPR001356 GO:0003677
Tsu01g00664 434 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 41 432 - -
Tsu01g00664 434 CDD homeodomain 357 418 IPR001356 GO:0003677
Tsu01g00664 434 MobiDBLite consensus disorder prediction 15 35 - -
Tsu01g00664 434 Pfam KNOX2 domain 227 275 IPR005541 GO:0003677|GO:0005634
Tsu01g00664 434 Pfam ELK domain 334 355 IPR005539 GO:0003677
Tsu01g00664 434 SMART ELK_2 334 355 IPR005539 GO:0003677
Tsu01g00664 434 Pfam KNOX1 domain 169 210 IPR005540 GO:0003677|GO:0005634
Tsu01g00664 434 MobiDBLite consensus disorder prediction 411 434 - -
Tsu01g00664 434 Pfam Homeobox KN domain 374 413 IPR008422 GO:0003677|GO:0006355
Tsu01g00664 434 ProSiteProfiles ELK domain profile. 334 354 IPR005539 GO:0003677
Tsu01g00664 434 SUPERFAMILY Homeodomain-like 356 419 IPR009057 -
Tsu01g00664 434 MobiDBLite consensus disorder prediction 1 53 - -
Tsu01g00664 434 SMART KNOX2_2 220 276 IPR005541 GO:0003677|GO:0005634
Tsu01g00664 434 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 41 432 - -
Tsu01g00664 434 Gene3D - 355 416 - -
Tsu01g00664 434 ProSiteProfiles 'Homeobox' domain profile. 354 417 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00664 Tsu-Chr1 5880238 5884541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00664 1 431 Homeobox Transcription Factor Family AT5G25220 66.222 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Tsu01g00664 KNOX2 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00664 - - cam:101494477 681.789