Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00660 ATGGTTGGTAAGAAAGGGTGTGTTCCAATCATTGACTATAAGCAAATAGAAAAAGCCACTGGAAATTTCAAGGAAAGTAACATCTTAGGTGAGGGTGGTTTTGGATGTGTTTACAAGGCTAGGTTGGATGATAATTTAGATGTTGCTATCAAGAGGTTGAACTGTGAATGTCAATATGCTGAAAGAGAATTTGAGCAATTAGGGTTTTCTCATCGCCGTTGGGTAACACTTTCATCTCCAAACGCGGTCgtcgaagaagaagaagaagaagctgcCAAAATGCCTTCACACAAGACATTCGTCATCAAGAAGAAGCTCGCCAAGAAGATGAGACAAAACAGACCTATCCCTTATTGGATTCGCATGAGAACCGACAACACCATCAGgTATAATGCTAAGCGTCGTCACTGGCGTCGTACCAAGCTTGGATTCTGA 435 0.3908 MVGKKGCVPIIDYKQIEKATGNFKESNILGEGGFGCVYKARLDDNLDVAIKRLNCECQYAEREFEQLGFSHRRWVTLSSPNAVVEEEEEEAAKMPSHKTFVIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00660 144 ProSitePatterns Ribosomal protein L39e signature. 123 139 IPR020083 GO:0003735|GO:0005840|GO:0006412
Tsu01g00660 144 Hamap 50S ribosomal protein L39e [rpl39e]. 94 144 IPR000077 GO:0003735|GO:0005840|GO:0006412
Tsu01g00660 144 PANTHER RIBOSOMAL PROTEIN L39E 65 144 - -
Tsu01g00660 144 Gene3D Phosphorylase Kinase; domain 1 3 79 - -
Tsu01g00660 144 SUPERFAMILY Ribosomal protein L39e 96 143 IPR023626 -
Tsu01g00660 144 Gene3D Ribosomal protein L39e 94 144 IPR023626 -
Tsu01g00660 144 PANTHER 60S RIBOSOMAL PROTEIN L39-2 65 144 - -
Tsu01g00660 144 ProSitePatterns Protein kinases ATP-binding region signature. 29 51 IPR017441 GO:0005524
Tsu01g00660 144 SUPERFAMILY Protein kinase-like (PK-like) 9 73 IPR011009 -
Tsu01g00660 144 Pfam Ribosomal L39 protein 102 142 IPR000077 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00660 Tsu-Chr1 5827827 5830830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00660 94 144 Cytoplasmic Ribosomal Protein Gene Family AT4G31985 90.196 4.20e-30 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00660 K02924 - gmx:100785380 122.479