Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00657 ATggaaaaacaaagcaaagaAAGTACTCCTCAAAGTCCAAGCACACCATTACAAAATCAAcatgaaaagaagaaacaacAATCTATTGAtcatgaagaagaagagatcacAAAGGTAgatactttattatttgatcTAAATGAATCTACCAATGAAGATTCTATTCTTGTTTGTAATAATCAACAAGAAAAAGAACTCAATCTCATAACTTCTTTAGATGTTGGTAATTCAtcattagaaaataaaaacactcTTGAGGTAGAACAAAGAGTTTTCTCTTGTAACTATTGTCATAGAAAATTCTATAGCTCACAAGCATTAGGAGGACACCAAAATGCTCACAAAAGAGAGAGATCGATAGCGAAAAGAGGACAAAGATTTGGAACACAAATtataacttcatcttcttcttttggttttggttttggttttccTATTATGCATAATAAACAAACCTATGCAAACATGGCTTCTTTGCCTCTTTATGGTGCTtttggtaataataataaaccttTAGGAATTCAAGCACACTCTATGATCCATAAGCCTTCTAATGGATTTGGAAGCTCTTATggacatcatcatcatcatggtTGGTCAAACTCAAGAACATTTATGGATCAACAACCTGGAATAGCGAAACTAGGCGCGGAAAATTTTCATCGAGCGACAACATCGGCAGCATTATCATCATCAAGAGGAAGTGTTGGTAGATTTGAAGTGGTGGATGCAATGATGAACTCTGCAGCTAATAAAGAAATGAAGCAAAAACATCTTGATTTATCCCTCAAGCTATGA 798 0.2719 MEKQSKESTPQSPSTPLQNQHEKKKQQSIDHEEEEITKVDTLLFDLNESTNEDSILVCNNQQEKELNLITSLDVGNSSLENKNTLEVEQRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGQRFGTQIITSSSSFGFGFGFPIMHNKQTYANMASLPLYGAFGNNNKPLGIQAHSMIHKPSNGFGSSYGHHHHHGWSNSRTFMDQQPGIAKLGAENFHRATTSAALSSSRGSVGRFEVVDAMMNSAANKEMKQKHLDLSLKL 265
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00657 265 Gene3D Classic Zinc Finger 70 138 - -
Tsu01g00657 265 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Tsu01g00657 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Tsu01g00657 265 MobiDBLite consensus disorder prediction 1 32 - -
Tsu01g00657 265 MobiDBLite consensus disorder prediction 7 22 - -
Tsu01g00657 265 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 265 - -
Tsu01g00657 265 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 5 265 IPR044246 GO:0009788
Tsu01g00657 265 SUPERFAMILY beta-beta-alpha zinc fingers 88 119 IPR036236 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu01g00657 Tsu-Chr1 5799735 5800730 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00657 26 265 C2H2 Transcription Factor Family AT5G10970 39.464 9.29e-45 150
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00657 - - lja:Lj5g3v0526470.1 249.21
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00657 01 5799735 5800730 Tsu07g00699 07 5663425 5664325 PCT