Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00655 ATGAACTTTTtgagagaaaacaaaaacaattttgacTTAGTAATCAGCAATGTTCATATGCCTGATATGGACTTACCTGTCATAATGTTTTCGGAAAACGATGATCCGAACATGGTGCTTAAAGAGCTACAAACCATTTGGCAGTATGTAATCAGGAAGaagaagactactgaaagaaGCAACAACGACGCGCCAAATTCTGATAGCGGAAATGGAATAGATTCTGCTTTGACAGGAAATTCTGATCAAAATGAAAGGCCTTCTAGTTCTagaaaaaggaaggaaaagaatgatgatgatattgatgagGAGAATGACGATGATCATGACAATGATGATCCAACCGCGCAAAAGAAGGCTCGCGTTGTTTGGACCCCTGCCTTACACCGCAAGTTTGTTGCTGCTGTTAATCAATTAGGCATTGACAAGGCTGTGCCGAAAAAGATTCTTGATTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCTAGCCATCTTCTGAGATATGGACTCTATATGAAAAGAATTAGTGATTGGGAAAACCAACAAGCTAATATGGCAGCACTGTCAGATCATAAGATGAATGATCTTAGAGATAATTTTGTTGCTGATAGGGAAAATGGAATAGATTCTGCTTTGACAGGATTTTCTGATCAAAATGAAAGGCCTTCTAGTTCTAGAAAAAGGAAGGAAGAGAAGGCTCGAGTTATTTGGACCGTTGACTTACACCGCAAGTTTATTGCTGCTGTTAATCAATTAGGCATTGACAAGGCTGTACCAAAAAAGATTCTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGGATGTGGCTAGGCATCTTCACAAATATAGACTCTATCTGAAAAGAATTAGCAATGAAAACCAACAAGCTAATATGGCAGCACTTTTAGGTAGTTCTGCAGATACATGTAGGTGA 942 0.3567 MNFLRENKNNFDLVISNVHMPDMDLPVIMFSENDDPNMVLKELQTIWQYVIRKKKTTERSNNDAPNSDSGNGIDSALTGNSDQNERPSSSRKRKEKNDDDIDEENDDDHDNDDPTAQKKARVVWTPALHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLLRYGLYMKRISDWENQQANMAALSDHKMNDLRDNFVADRENGIDSALTGFSDQNERPSSSRKRKEEKARVIWTVDLHRKFIAAVNQLGIDKAVPKKILDLMNVEKLTREDVARHLHKYRLYLKRISNENQQANMAALLGSSADTCR 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00655 313 PANTHER TWO-COMPONENT RESPONSE REGULATOR 207 299 IPR045279 GO:0009736
Tsu01g00655 313 Pfam Myb-like DNA-binding domain 121 170 IPR001005 -
Tsu01g00655 313 Pfam Myb-like DNA-binding domain 239 286 IPR001005 -
Tsu01g00655 313 SUPERFAMILY Homeodomain-like 233 291 IPR009057 -
Tsu01g00655 313 MobiDBLite consensus disorder prediction 56 117 - -
Tsu01g00655 313 MobiDBLite consensus disorder prediction 62 85 - -
Tsu01g00655 313 SUPERFAMILY Homeodomain-like 117 176 IPR009057 -
Tsu01g00655 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 178 IPR017930 -
Tsu01g00655 313 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 187 - -
Tsu01g00655 313 PANTHER TWO-COMPONENT RESPONSE REGULATOR 207 299 - -
Tsu01g00655 313 Gene3D - 115 178 - -
Tsu01g00655 313 Gene3D - 231 293 - -
Tsu01g00655 313 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 119 170 IPR006447 GO:0003677
Tsu01g00655 313 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 234 287 IPR006447 GO:0003677
Tsu01g00655 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 231 290 IPR017930 -
Tsu01g00655 313 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 187 IPR045279 GO:0009736
Tsu01g00655 313 SUPERFAMILY CheY-like 5 45 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00655 Tsu-Chr1 5780086 5783044 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00655 204 302 Response Regulator Gene Family AT2G25180 54.622 1.35e-29 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu01g00655 Myb_DNA-binding 1.4e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00655 - K14491 cam:101500109 249.21