Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00654 ATGAATGATCTTAGAGATAAGTTTCCTATTGGAATGCGTGTTCTTGCTGTTGATGATGATAGAACATGTctcaaaattttggaaaaacTTCTCCTTAAGTGTCAATACCATgTAACCACTGCTCAAAACGCGATAACAGCGCTGAACATGTTGAGAGAAAACAAAAGCAATTTTGACTTAGTAATCAGCAATGTTCATATGCCTGATATGGATGGATTCAAGCTGCTTGAGCTTATTGGACTTGAGATGGACTTACCTGTCATAATGTTTTCAGCAAACGATGATCCGAAGATGGTGCTTAAAGGAATTACTCATGGTGCTTGTGATTATCTGCTGAAACCTGTTATACTGAAAGAGGTACAAACCATTTGGCAGCATGTGATCAGGAAGAAGAGGACTAGCAAAAGAAGCCACAACGACGCGCCAAATTCTGATAGCGGAAATGGAATAGATTCTGCTTTGACAGGAAATTCTGATCAAAATGAAAGGCCTTCTAGTTCTagaaaaaggaaggaaaagaatgatgatgatgttgatgaggAGAATGACGATGATCATGACAATGATGATCCAACCGCGCAAAAGAAGGCTCGCGTTGTTTGGACCCCTGCCTTACACCGCAAGTTTGTTGCTGCTGTTAATCAATTAGGCATTGACAAGGCTGTGCCGAAAAAGATTCTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCTAGCCATCTTCAGAAATATAGACTCTATCTGAAAAGAATTAGTGATGGGGAAAACCAACAAGCTAATATGGCAGCACTGTTAGGTAGTTCTTCGGATACATCCTATTCAAAAATGACTTCTCTCAGTGGCTCTACACAGTTTCATAACAATCCTTTCAAACCCTTTGCATCTGGTGGTAGTATGAGTAGTATATTCAACATTCCTACTAATGTGAATATGCATGGATTCTCTTCTTCTGGAACTCCTCAGCTGAATCACACACATGATCAGCTAAAGTTCCAATCGGCCATGACTCGCGAAAATCTGAATGATGTTCAAAGAATGCCGATTTCTTCTGCAGGGCTTGATCAATTGCTACACAGTAAAGAATCGAATCGTCAAGAGAAACAAGTAGCTGAAGGATACAAAAATTTAGCCTCTCAGAATTCACAGTATCTTCCTTCACTTGAAAACCGAAGGTGCAACGGTATTTGGTCAAACACTATGCAATTACCTGGAACAAACTCTTATCTTCCAAGAGAAGTTTTCGGCCATGCTTCTGCATCTCATAAGGATAACAGAAATGCTGCTATGCCTCATACAGAAGCACATGAATTCTGCAATAATGTGCCATTTCAAGGTTGGGATAATAACCATAATAATCATGATGGAAGTTACCATTCTTCTCATGGGGTTGGAAGTTCAATAGGCTCGATGATTCCTGCTGCGCATGCTGTCGAACCAGAAGAAAACTTGGACTATAATTATTGTGATTCGGTACAAATGAAGCGTGATCGTACCATGGACCAAACAGAAGGGCCATCATTCAAACCACATCAGGCTTATATGATGAACAACCAGATGAAGTTTCAAAACAGTGGAATCTCTAATAGTCCTGGTTCACTCGAAGATGCTGTCCGTGACATCATCAAGCAGAAACAATTATATGCTAATTTCTCTGGTGGCTCAATGTGA 1677 0.3882 MNDLRDKFPIGMRVLAVDDDRTCLKILEKLLLKCQYHVTTAQNAITALNMLRENKSNFDLVISNVHMPDMDGFKLLELIGLEMDLPVIMFSANDDPKMVLKGITHGACDYLLKPVILKEVQTIWQHVIRKKRTSKRSHNDAPNSDSGNGIDSALTGNSDQNERPSSSRKRKEKNDDDVDEENDDDHDNDDPTAQKKARVVWTPALHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISDGENQQANMAALLGSSSDTSYSKMTSLSGSTQFHNNPFKPFASGGSMSSIFNIPTNVNMHGFSSSGTPQLNHTHDQLKFQSAMTRENLNDVQRMPISSAGLDQLLHSKESNRQEKQVAEGYKNLASQNSQYLPSLENRRCNGIWSNTMQLPGTNSYLPREVFGHASASHKDNRNAAMPHTEAHEFCNNVPFQGWDNNHNNHDGSYHSSHGVGSSIGSMIPAAHAVEPEENLDYNYCDSVQMKRDRTMDQTEGPSFKPHQAYMMNNQMKFQNSGISNSPGSLEDAVRDIIKQKQLYANFSGGSM 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00654 558 PIRSF RR_ARR_type-B 1 558 IPR017053 GO:0003677|GO:0003700|GO:0009736
Tsu01g00654 558 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 542 - -
Tsu01g00654 558 SMART REC_2 12 124 IPR001789 GO:0000160
Tsu01g00654 558 Gene3D - 192 255 - -
Tsu01g00654 558 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 196 249 IPR006447 GO:0003677
Tsu01g00654 558 Pfam Response regulator receiver domain 14 120 IPR001789 GO:0000160
Tsu01g00654 558 Gene3D - 11 144 - -
Tsu01g00654 558 MobiDBLite consensus disorder prediction 140 162 - -
Tsu01g00654 558 Pfam Myb-like DNA-binding domain 198 248 IPR001005 -
Tsu01g00654 558 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 193 252 IPR017930 -
Tsu01g00654 558 CDD REC_typeB_ARR-like 14 128 - -
Tsu01g00654 558 ProSiteProfiles Response regulatory domain profile. 13 128 IPR001789 GO:0000160
Tsu01g00654 558 MobiDBLite consensus disorder prediction 129 194 - -
Tsu01g00654 558 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 542 IPR045279 GO:0009736
Tsu01g00654 558 SUPERFAMILY CheY-like 11 136 IPR011006 -
Tsu01g00654 558 SUPERFAMILY Homeodomain-like 194 253 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00654 Tsu-Chr1 5770646 5773602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00654 6 558 Response Regulator Gene Family AT2G25180 42.088 1.45e-108 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Tsu01g00654 Response_reg 8.2e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00654 - K14491 mtr:MTR_1g013170 623.239