Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00652 ATGGTCGTGTACAGGAAGAAGGCAGCTGCCTCTACTTCTCGGATGCTCCATTCGTCCCCTTCTTCCCATGCTCCATTCGAGGGTCCTGCTATTGTTAACACCCAAGCTCAATTGATGGAGCTGATCGATGAGAGTCCTTTTACGATTGTTCAAGAAGGGACCGACTCCTTAGTTCTTTCTTATGAGAGGCAACGAGAAGGGAAAGAAATTCTAATAAAGGACTCGCCTGTTGAACTTTTGGTGGACGATTTGTCGGCTCCTCAAGAAAGGACGTTGTCTGTTGTTGTTATTGGCGGTGTTCCTTCACCTGGATGGTGGCTAGCCATCAAGGGTGGTCTCTATACTTGCTGCTGGACTAGTGTCCTTTGGCGGTGTGAGCAGAACATGAGTAGCTTGGTTGAGAGGCTTCGTGTAAAACCTGATCGCAAGCGATTTAATACTATAGACGAGTCAGATGATGATGCTGATTTAATGCCCAGAAAAAGACCGAAAACTCAGGAAAAGTTTGAGAGGATTGTTAGAAGCGACGCAAAAGAGAATTCATGCCAAGCATGTGGAGAGAGAGGAAATCTCCTGAGCTGTGAAACATGCACTTATTCTTTCCATACCGAGTGTTTACTCGCGCCACTTAAAAGGCTTCGTCTGAACAACTGGATGTGCCCTGAATGTGTTAGCCCACTTAATGATATTGATAAGATATTAGATTATGAGACACGTCCTGTTGTAGATGGCGAATGTGATGCCAAAGATTTGGAGTCGAAACAAAGTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTATCATATATGCACTGCAAATGGGTGCTAGAGGAAGAGTTTCTGAAGGCTTTCAAGTATAATCCTGGTTTAAAGACCAAAGTAAACAACTTTCATCGTCAATTGACAGAAGTCCGAAAATTGGATGGAGATTTTGTTGCTATTCGACCTGAATGGACTACGGTTGATCGAATAATAGCTTGCAGGGGcgataatgatgatgagaagGAATATCTGGTGAAATGGAAAGAGCTTCCTTATGATGAGAGCAATTGGGAACTTGAATCAGATATCTCTACGTTTCAGACGGAAATAGAGAGATTCAATTTATTTCAGTCTAGGTCTAGAAAAATTTCTTATAGCAAGCAAAAAAGCAGTGTTAATGATGATGCTGAATTGACAAGGCAGCAGAAAGAATTTCAACAGTATGAACATAGCCCCGAGTTTCTTTCAGGGGGTACACTACATCCATATCAACTTGAAGGATTGAACTTTCTACGATTTTCTTGGTCCAAGCAAACTCATGTTATACTTGCCGATGAAATGGGACTTGGAAAAACCATACAAAGTATCGCTTTCTTAGCTTCTCTTTTCAAAGAGAATGTTTCTCCACATCTGGTGGTTGCTCCACTTTCTACACTACGAAACTGGGAGCGCGAATTTGCAACTTGGGCACCTGAAATGAATGTTATTATGTATGTTGGATCTTCCCAAGCTCGTAGCATTATTagagaatatgaattttactttccggacaagaacaagaaaaataaaagcatCAAGTTTGATGTCCTTTTGACATCATATGAGATGATAAACCTTGATACTGCGGCATTGAATCCTATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAACAAGGATTCGAAACTGTTTTCTTCGTTGAAGCTTTTCTCTAGCAGACATCGCGTGCTTTTGACAGGAACTCCTCTTCAgAACAATCTGGACGAACTCTTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAATTTTAGAGGAGTTCCAAGAAGAGTTTAAGGATATCAATCAAGAACAACAGATTTCAAGGCTTCATAAACTGTTGGCTCCACATCTCCTGCGAAGAGTGAAGAAAGATGTCATGACTAAACTACCTCCTAAAAAGGAGCTCATTGTACGCGTTGAGTTGAGCagcaaacaaagaaaatattataaggCAATTTTGACTCGTAATTATGATGTATTAACCGGCCATGGTGGAGCACAAATTTCTCTTAACAATGTTGTCATGGAACTGCGTAAGCTATGTTGTCATCCATACATGTTGGAAGGAGTTGAACCAATTATGGCCGAAGAAAAAGAAGTGAATAAACAACTGGTGGAATCATCAGGGAAGTTGCAATTGTTGGACAAGCTGATGGTGAAGCTTAAAGAGCAAGGGCATAGAGTCCTTATATATTCCCAGTTTCAGAAAATGCTGGACATGCTCGAAGATTATTGTGTTTATAAGCATTGGCAGTATGAAAGAATAGATGGCAAGGTTGGTGGAGCTGAAAGACAAGTACGGATAGATCGATTTAATgagaaaaattcttcaaaattttgttttcttctttctacTAGAGCTGCTGGGGTGGGGATAAACCTTGCAACGGCTGACACAGTTATTTTATATGACAGTGATTGGAATCCTCATGCTGATCTACAAGCGATGGCAAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTGATTTATAGGCTTATAACACGAGGAACAATTGAAGAAAGGATGATAGAAATAGCAAAGAAGAAAATGGTGTTAGAACACTTAGTTGTAGGCGGCATGAAGGGTCAAAATATAAACCAGGAAGAGTTGGACGATATCATAAGATATGGCTCAAAGGAGTTGTTTGCTGATGAGAATGATGCAGTGGGAAAATCTCGTCAAATTCATTACGACGATGCTGCTATAGACAGATTATTGGATCGCGATCAAGTTGGAGATGAAGAGGCCACTTTggatgatgaaaatgaaaacgGATTTCTGAAAGCCTTTAAGGTGGCTAATTTTGAATACATAGATGAAGCCGAGTCTGCAGGAGAAATAGAGAATAATCTTTCTGTGAGCAGTTCAGGGGGGCAAAAGTATTGGGAGGAACTGCTAAAAGGCAGATACCAAAAGAACCAAGTTGAAGAACTTGATGCATTGGGAAAAGGGAAGAGAAGCCGCCGAAAATTGCTGGTGAGAGGTTTTACTCATTTAGATGATCTAAGCTCCGACGAAGAAGATGAGAATTATGAAGTCAATCTTACTTCGAAAAGTCATTCGAAAAAGAAAGCTCAAAtTGCAGACAACTCAAATCCACTTCCTTTAATGGAAGGCGAAGGAAACTCACTTAAAGTACTCGGTTTTAATCTAAGTCAGAGGAACACTTTCCTTCAAATTTTAATGAGGTTTGGGGTTGGCGATTTTGATTGGAAGGAGTTTGCTCCGCGCATAAGGCAGAAGACTTGGCATGAAATCAATGCGTATGGAAATCTTTTCATGTCTCATATTGCTGAAGAGATAAATGATTCCCCTACATTCTCAGATGGTGTTCCGAAAGAAGGACTACAAATAGAAGATGTACTTGTTAGAATTGCGGTTCTGCTATCGATAAGGGAAAAAGTGAAGTTTGCATCAGAAAATCCCGGCACTCCACTTTTTTCAGATGACATCTTGTCACACTATACAGGCTTGAAAGTAAGAAAGGCATGGAAGCAGGAGCATGATTTAGTCTTACTGCGCGCAGTTTTGAAGCATGGATATGGAAAGTGGGCAGCTATTGTTGATGATGAGGATCTGAATATTCGGATGGTCATCTGTCAGGAGTTAAATATTCCCTTTATAAATTTACCAGTGTGCGGACAAGTTGGCTCTCAAGCGAAAAACGGTGCAAATATGACAAATATGGAATCCACCAGCAACCAATCTACGGAGAATAGCGTCAATGTCATGGAAGTTAATGGAGAACAAGGTTCTTGTGTTGCCGGGTACCAAGAAAAGCTGGATCAATTTAAAAACATGCAGAGAAGACAAActgaatttataaaaaagagATTTCTCCTTTTGGAGAAATTTCTCAATGATGAAAGCGCGAAAGAATACCATGATAATATTTCCGCAAAGGAAGGGATGAACCAATAA 3966 0.3911 MVVYRKKAAASTSRMLHSSPSSHAPFEGPAIVNTQAQLMELIDESPFTIVQEGTDSLVLSYERQREGKEILIKDSPVELLVDDLSAPQERTLSVVVIGGVPSPGWWLAIKGGLYTCCWTSVLWRCEQNMSSLVERLRVKPDRKRFNTIDESDDDADLMPRKRPKTQEKFERIVRSDAKENSCQACGERGNLLSCETCTYSFHTECLLAPLKRLRLNNWMCPECVSPLNDIDKILDYETRPVVDGECDAKDLESKQSFVKQYLVKWKGLSYMHCKWVLEEEFLKAFKYNPGLKTKVNNFHRQLTEVRKLDGDFVAIRPEWTTVDRIIACRGDNDDEKEYLVKWKELPYDESNWELESDISTFQTEIERFNLFQSRSRKISYSKQKSSVNDDAELTRQQKEFQQYEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFKENVSPHLVVAPLSTLRNWEREFATWAPEMNVIMYVGSSQARSIIREYEFYFPDKNKKNKSIKFDVLLTSYEMINLDTAALNPIKWECMIVDEGHRLKNKDSKLFSSLKLFSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGILEEFQEEFKDINQEQQISRLHKLLAPHLLRRVKKDVMTKLPPKKELIVRVELSSKQRKYYKAILTRNYDVLTGHGGAQISLNNVVMELRKLCCHPYMLEGVEPIMAEEKEVNKQLVESSGKLQLLDKLMVKLKEQGHRVLIYSQFQKMLDMLEDYCVYKHWQYERIDGKVGGAERQVRIDRFNEKNSSKFCFLLSTRAAGVGINLATADTVILYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMIEIAKKKMVLEHLVVGGMKGQNINQEELDDIIRYGSKELFADENDAVGKSRQIHYDDAAIDRLLDRDQVGDEEATLDDENENGFLKAFKVANFEYIDEAESAGEIENNLSVSSSGGQKYWEELLKGRYQKNQVEELDALGKGKRSRRKLLVRGFTHLDDLSSDEEDENYEVNLTSKSHSKKKAQIADNSNPLPLMEGEGNSLKVLGFNLSQRNTFLQILMRFGVGDFDWKEFAPRIRQKTWHEINAYGNLFMSHIAEEINDSPTFSDGVPKEGLQIEDVLVRIAVLLSIREKVKFASENPGTPLFSDDILSHYTGLKVRKAWKQEHDLVLLRAVLKHGYGKWAAIVDDEDLNIRMVICQELNIPFINLPVCGQVGSQAKNGANMTNMESTSNQSTENSVNVMEVNGEQGSCVAGYQEKLDQFKNMQRRQTEFIKKRFLLLEKFLNDESAKEYHDNISAKEGMNQ 1321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00652 1321 CDD CD1_tandem 226 300 - -
Tsu01g00652 1321 Gene3D - 644 868 IPR027417 -
Tsu01g00652 1321 Gene3D - 226 315 - -
Tsu01g00652 1321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 634 IPR027417 -
Tsu01g00652 1321 Pfam CHD subfamily II, DUF1087 957 1006 IPR009463 -
Tsu01g00652 1321 Pfam PHD-finger 182 224 IPR019787 -
Tsu01g00652 1321 SMART DUF1086_2 1015 1167 IPR009462 GO:0003677|GO:0006338
Tsu01g00652 1321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 225 IPR013083 -
Tsu01g00652 1321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 636 890 IPR027417 -
Tsu01g00652 1321 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 133 1152 - -
Tsu01g00652 1321 SUPERFAMILY Chromo domain-like 194 303 IPR016197 -
Tsu01g00652 1321 Gene3D - 1133 1308 - -
Tsu01g00652 1321 Pfam SNF2-related domain 435 701 IPR000330 GO:0005524|GO:0140658
Tsu01g00652 1321 CDD CD2_tandem 318 368 - -
Tsu01g00652 1321 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 727 888 IPR001650 -
Tsu01g00652 1321 SUPERFAMILY Chromo domain-like 314 369 IPR016197 -
Tsu01g00652 1321 SMART DUF1087_2 952 1016 IPR009463 -
Tsu01g00652 1321 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 427 599 IPR014001 -
Tsu01g00652 1321 Pfam CHD subfamily II, SANT-like domain 1034 1164 IPR009462 GO:0003677|GO:0006338
Tsu01g00652 1321 SMART PHD_3 181 224 IPR001965 -
Tsu01g00652 1321 CDD SF2_C_SNF 722 848 - -
Tsu01g00652 1321 SMART ultradead3 411 610 IPR014001 -
Tsu01g00652 1321 Pfam Helicase conserved C-terminal domain 724 837 IPR001650 -
Tsu01g00652 1321 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 133 1152 - -
Tsu01g00652 1321 SMART helicmild6 753 837 IPR001650 -
Tsu01g00652 1321 SMART chromo_7 227 303 IPR000953 -
Tsu01g00652 1321 SMART chromo_7 318 373 IPR000953 -
Tsu01g00652 1321 ProSiteProfiles Zinc finger PHD-type profile. 179 226 IPR019787 -
Tsu01g00652 1321 Pfam Chromo (CHRromatin Organisation MOdifier) domain 321 369 IPR023780 -
Tsu01g00652 1321 Pfam Chromo (CHRromatin Organisation MOdifier) domain 252 284 IPR023780 -
Tsu01g00652 1321 Gene3D - 407 643 IPR038718 -
Tsu01g00652 1321 Gene3D - 316 370 - -
Tsu01g00652 1321 ProSiteProfiles Chromo and chromo shadow domain profile. 320 368 IPR000953 -
Tsu01g00652 1321 ProSitePatterns Zinc finger PHD-type signature. 182 223 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00652 Tsu-Chr1 5741389 5750277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00652 437 898 RAD5 or RAD16-like Gene Family AT1G02670 24.309 1.81e-32 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu01g00652 SNF2_N 1.3e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00652 K11643 - gmx:100804203 1774.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00652 01 5741389 5750277 Tsu07g00701 07 5677275 5697606 PCT