Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00651 ATGTCTAACTATCACCGGAACAACGTCGGAAACCTCGTTCTcggccaccaccaccaccacaactcCACCAAAACACCGACATTCTCCAGTCACTTCCGCTTATGGAACTCTCTCTCCATCGCTTCCCTCCGTCGCATCATCTTCGACGCCGTCAGCTGCGGTGCTAGCTCCCGTTACAATCACCGTCGACGAAGCAACATCGACGAATATGACACCGAAGACTTCTCTTCAGCAACGAGATCggattcttcttcttccttcgaTAAACGGAAACACAAACAAGAAAATCAAAGCTATAAACCGAATGCGAAATCGGAGAAACTTTCCGATCTTCTTAACATAGCGGAGATGGAAACAGAAGAGGAAgcgaagaagaaagaagaagcaTTAGAAGAACTGAAAAGACTCGTGAAGGATTTACACAACGAAGATGATTCAGTTAAACGGCGAGAAGCTGCAACCACCGTGAGAATGCTCGCTAAGGAGAATTTAGAAGTTCGTGAAACTCTTGCTATGCTCGGAGTGATTCCGCCGCTAGTCACAATGCTTGATTCGCAAGACGTTGATTCTCAGATCGCTTCGCTCTATGCATTGCTCAATCTCGGAATCGGAAACGATGCAAATAAAGCAGCCATTGTTAAAGTTGGTTGTGTTCATAAGATGCTTAAGATTATTGAATCTTCGGATGGTATTGATTCCACGGTTTCTGAAGCGATTGTTGCGAATTTTCTTGGATTAAGTGCTTTGGATTTGAATAAGCCAATAATTGGGTCTTCTGCTGCAATACCCTTTTTAGTTAGAACCCTTCAGAGTTTAGATAAGAAAAGTAGTAGAAATCAAGTTAAGCAAGATGCTCTTAGAGCACTTTACAATCTTTCAATTTTCCCAGCCAATATTGCATTCATTTTGGAAACTGATTTGGTACCGTTTTTGATAAACTCGATTGGCGATATGGAAGTGACCGAAAGAAACCTCTCGATCCTTAGTAATCTGGTATCGACTAGAGCGGGTAGAAAAGCGATAAGTAGTGTTCCTGATGCGTTTCCTATCTTGGTGGATGTGTTGAATTGGACAGATTCGCCTGAATGCCAGGAAAAGGTTTCGTACATTTTGATGGTTATGTCGCATAAATCTTATGGTGACAAGCAGGCCATGATTGAGGCTGGGATTATGTCGTCGCTCCTTGAGTTGTCGCTTATTGGTACTACTTTGTCTCAGAATCGGGCGTCAAGACTATTGGAAAGTTTGAGAATAGACAAAGGGAAACAAGTTTCAGGGAACTACGGCAGAAATTTAGGCACAACCGTCTCTGCTCCAATTTGCGGAACTTCATCAAGTTCAAAACCAGATGATGGAGGAGGAAAAGCATGTTTGGAAGAAGACGAAGATATGATGAGCGAGGAAAAGAAAGCAGTGAAACAATTAGTCCAGTTAAGTTTACAAAACAACATGAGAAAAATTGTTAAGAGAGCCAACTTGCCGCAAGATATCGTTCCATCAGATCATTTTAAGTCGCTCAGTTCAAGTTCAACTTCAAAGAGCTTACCATTCTGA 1554 0.4028 MSNYHRNNVGNLVLGHHHHHNSTKTPTFSSHFRLWNSLSIASLRRIIFDAVSCGASSRYNHRRRSNIDEYDTEDFSSATRSDSSSSFDKRKHKQENQSYKPNAKSEKLSDLLNIAEMETEEEAKKKEEALEELKRLVKDLHNEDDSVKRREAATTVRMLAKENLEVRETLAMLGVIPPLVTMLDSQDVDSQIASLYALLNLGIGNDANKAAIVKVGCVHKMLKIIESSDGIDSTVSEAIVANFLGLSALDLNKPIIGSSAAIPFLVRTLQSLDKKSSRNQVKQDALRALYNLSIFPANIAFILETDLVPFLINSIGDMEVTERNLSILSNLVSTRAGRKAISSVPDAFPILVDVLNWTDSPECQEKVSYILMVMSHKSYGDKQAMIEAGIMSSLLELSLIGTTLSQNRASRLLESLRIDKGKQVSGNYGRNLGTTVSAPICGTSSSSKPDDGGGKACLEEDEDMMSEEKKAVKQLVQLSLQNNMRKIVKRANLPQDIVPSDHFKSLSSSSTSKSLPF 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00651 517 MobiDBLite consensus disorder prediction 84 100 - -
Tsu01g00651 517 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 517 - -
Tsu01g00651 517 SUPERFAMILY ARM repeat 132 412 IPR016024 -
Tsu01g00651 517 Coils Coil 458 478 - -
Tsu01g00651 517 MobiDBLite consensus disorder prediction 498 517 - -
Tsu01g00651 517 Coils Coil 112 150 - -
Tsu01g00651 517 MobiDBLite consensus disorder prediction 1 28 - -
Tsu01g00651 517 MobiDBLite consensus disorder prediction 501 517 - -
Tsu01g00651 517 Pfam Armadillo/beta-catenin-like repeat 166 201 IPR000225 GO:0005515
Tsu01g00651 517 SMART arm_5 249 294 IPR000225 GO:0005515
Tsu01g00651 517 SMART arm_5 295 333 IPR000225 GO:0005515
Tsu01g00651 517 SMART arm_5 163 203 IPR000225 GO:0005515
Tsu01g00651 517 SMART arm_5 205 248 IPR000225 GO:0005515
Tsu01g00651 517 MobiDBLite consensus disorder prediction 71 105 - -
Tsu01g00651 517 Gene3D - 67 272 IPR011989 -
Tsu01g00651 517 MobiDBLite consensus disorder prediction 440 464 - -
Tsu01g00651 517 Gene3D - 273 426 IPR011989 -
Tsu01g00651 517 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00651 Tsu-Chr1 5731601 5734730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00651 117 450 U-box Gene Family AT1G24330 28.775 3.05e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00651 - - mtr:MTR_1g014420 765.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00651 01 5731601 5734730 Tsu07g00704 07 5721721 5723673 PCT