Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00647 ATGGCCACGGATAACAGTTTGGAAGGAGATATTCCGAGTCTTCAACCAGTTGTAGATATTGACAGAAAGCAGGATTCAGAGAAGAGTAAGGCTAAAGATGAAAAAACCGAGACAGTACCCTTATACAAGCTTTTCTCATTTGCTGATCCTTTGGATCGTTTATTGATGTTGGTGGGGACTGTTGGTGCTATTGGGAATGGACTATCTATACCCTTGATGCTTTTAATATTTGGATCTTTGATCAATTCATTTGGAGATTCCACGGACTCAAACGTTGTTGATGAAATCTCCAAGGTGTCTCTAAAATTTGTATACTTGGGGAAGGTGCCTTTGTTGCAGTTAACTTGCTGGATGATCACTGGGGAGATACAGGCTGCAAGAATTAGAGGCTTATACCTTAAAACAATTTTGAGACAAGATGTGAGCTTCTTTGATAAGGAAACTAACACTGCCGAGGTTGTTGGAAGGATGTCGGATGATACTGTTCTTATTAATGATGCCATGGGAGAGAAGGTTGCATCATTCACTGGGGAGAAAGAAGCTATAGCTAAATATAATCAGTCCTTAATCAAGGTCTGCAAAACTTCAGTGCAGGAGGCACTAGCATCTGGTTTGGGGTGTCTTGGGCAGACATCTCCAAGCCTAAGTGCTTTTGCTGCAGGACAAGCTGCAGCCTTTAAGATGTTTGAAACGATTAAAAGGAAGCCAGAAATTGATGCCTATGACACAACTGGGAAAAAGCATGATGATATTCGCAGAGACATAGAGCTTAGGGAGGTTTGCTTTAGTTACCCTACAAGACCAGATGAATTGATATTCAATGGATTTTCTCTTTCATTACCAAGCGGCACTACTGCAGCTTTGGTAGGGCAAAGTGGGAGTGGGAAATCCACAGTTGAGAATATTGCCTATGGCAAAGATGGTGCAACTGATGATGAAATCAGAGCTGCAGCAGAACTTGCCAATGCTGCCAAATTTATAGATAAACTTCCTCAGGGACTAGACACAATGGTTGGTGAACATGGAACTCAGCTCTCTGGAGGTCAAAAGCAAAGAGTGGCAATTGCAAGAGCAATTTTGAAAGATCCAAGAATCCTACTTCTTGATGAAGCTACAAGTGCCCTTGATGCAGAATCTGAGAGAATTGTCCAAGAGGCATTGGACAGAATAATGATAAACCGGACAACTATCGTTGTAGCTCACCGCTTAAGTACAATAAGAAATGCTGATACCATTGCTGTCATTCATCAAGGAAAAATAGTTGAAAGAGGTTCGCATGATGAGCTCACCAAGGATCCCAATGGAGCCTATAGTCAGCTAATTAGACTGCAAGAAACAAAGGGGTCAGAACAGAATGATGTAAATGACACAAACAAGTCAAACAGTATACTGTATTCTGGAAGACAATCGAGTCAAAGATCTTTTTCCTCAAGATCTATAAGCCAAGGGTCATCTGGAAACAGTGGTCATCACTCATTCTCAGCATCTCATGTTGCACCGACAGCAGATGGCTTCTTAGAAACTGCAGATGGTGAACCTCAAGCTTCTCTTTCAATAGTTTCTTCACCACCAGAATTGCCACTCTATCGCCTGACATATTTTAACAAGCCTGAGATTCTAGTCTTATTGATGGGGACTATAGCTGCAGTGCTGCAAGGAGTCTTAATGCCCACATTCGGGGTCATGCTTTCTAAAATGATAAGTGTTTTCTACAAACCAGCTCATGAACTTCGTCATGATTCAAAAGTTTGGGCAATAGTGTTTGAAGCGGTTGCTGTGGCATCATTACTCATTATTCCATGTAGATTCTACCTTTTTGGTGTTGCTGGAGGTAAGTTGATCCAAAGGATCCGGAACGTGTGTCTTGAGAAAATAGTTCACATGAATGTAAGTTGGTTTGATGAGGCTGAGCATTCAAGCGGATCACTTGGAGCAAGGCTCTCCACTGATGCAGCTTCAGTTAGAGCTCTGGTTGGAGATGCACTTGGTCAAGAAGGATGGGAACAACTTTGGAAGGTGCAAGCTCCAAACATTTGCTTTGACGTATTTGTAAGGACTGCCTTCCTACTCGGAAACGGCTGCATGATAGCGTGGCAAAGTTCAGGTCTGTTTGTGTGCTTGCTGCCTCGGCTTCAGCAGTGTAGCACTGTTAAGGAGGGAATGGGTAGAAGGAAACGGGGCAGCAGCTTAGTAACAAAGCCTTGCGTTTATGGGAAGAATGGTGAGCTGCACAATCTATGCGAAATAGTGTACCTCAAACTGTCACGGAACAACAACGTATATAGTGGCAAAAACCGAATTATGGGTGGTTTAAGTGTAATGTTGATGCGGGATTTCACAACGCGGAAGGAAAAACAAGTTCGGGGTGGTGTGGTCGTGATCATGATGGACGGTTTGTAG 2400 0.4283 MATDNSLEGDIPSLQPVVDIDRKQDSEKSKAKDEKTETVPLYKLFSFADPLDRLLMLVGTVGAIGNGLSIPLMLLIFGSLINSFGDSTDSNVVDEISKVSLKFVYLGKVPLLQLTCWMITGEIQAARIRGLYLKTILRQDVSFFDKETNTAEVVGRMSDDTVLINDAMGEKVASFTGEKEAIAKYNQSLIKVCKTSVQEALASGLGCLGQTSPSLSAFAAGQAAAFKMFETIKRKPEIDAYDTTGKKHDDIRRDIELREVCFSYPTRPDELIFNGFSLSLPSGTTAALVGQSGSGKSTVENIAYGKDGATDDEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMINRTTIVVAHRLSTIRNADTIAVIHQGKIVERGSHDELTKDPNGAYSQLIRLQETKGSEQNDVNDTNKSNSILYSGRQSSQRSFSSRSISQGSSGNSGHHSFSASHVAPTADGFLETADGEPQASLSIVSSPPELPLYRLTYFNKPEILVLLMGTIAAVLQGVLMPTFGVMLSKMISVFYKPAHELRHDSKVWAIVFEAVAVASLLIIPCRFYLFGVAGGKLIQRIRNVCLEKIVHMNVSWFDEAEHSSGSLGARLSTDAASVRALVGDALGQEGWEQLWKVQAPNICFDVFVRTAFLLGNGCMIAWQSSGLFVCLLPRLQQCSTVKEGMGRRKRGSSLVTKPCVYGKNGELHNLCEIVYLKLSRNNNVYSGKNRIMGGLSVMLMRDFTTRKEKQVRGGVVVIMMDGL 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00647 799 PANTHER - 172 206 - -
Tsu01g00647 799 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 255 442 IPR003439 GO:0005524
Tsu01g00647 799 PANTHER - 301 663 - -
Tsu01g00647 799 PANTHER - 26 172 - -
Tsu01g00647 799 PANTHER - 208 299 - -
Tsu01g00647 799 Pfam ABC transporter transmembrane region 542 664 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g00647 799 Pfam ABC transporter transmembrane region 56 176 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g00647 799 ProSitePatterns ABC transporters family signature. 345 359 IPR017871 GO:0005524
Tsu01g00647 799 Gene3D ABC transporter type 1, transmembrane domain 446 461 IPR036640 GO:0005524|GO:0016021
Tsu01g00647 799 Gene3D ABC transporter type 1, transmembrane domain 34 179 IPR036640 GO:0005524|GO:0016021
Tsu01g00647 799 Gene3D ABC transporter type 1, transmembrane domain 204 244 IPR036640 GO:0005524|GO:0016021
Tsu01g00647 799 Gene3D ABC transporter type 1, transmembrane domain 500 711 IPR036640 GO:0005524|GO:0016021
Tsu01g00647 799 SUPERFAMILY ABC transporter transmembrane region 530 663 IPR036640 GO:0005524|GO:0016021
Tsu01g00647 799 MobiDBLite consensus disorder prediction 20 34 - -
Tsu01g00647 799 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 26 172 - -
Tsu01g00647 799 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 208 299 - -
Tsu01g00647 799 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 111 175 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g00647 799 SUPERFAMILY ABC transporter transmembrane region 44 178 IPR036640 GO:0005524|GO:0016021
Tsu01g00647 799 Pfam ABC transporter 274 316 IPR003439 GO:0005524
Tsu01g00647 799 Pfam ABC transporter 326 373 IPR003439 GO:0005524
Tsu01g00647 799 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 172 206 - -
Tsu01g00647 799 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 301 663 - -
Tsu01g00647 799 SMART AAA_5 282 419 IPR003593 -
Tsu01g00647 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 444 IPR027417 -
Tsu01g00647 799 MobiDBLite consensus disorder prediction 445 494 - -
Tsu01g00647 799 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 543 663 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g00647 799 MobiDBLite consensus disorder prediction 1 34 - -
Tsu01g00647 799 Gene3D - 300 445 IPR027417 -
Tsu01g00647 799 Gene3D - 245 299 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00647 Tsu-Chr1 5694257 5698897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00647 207 660 Calmodulin-binding Proteins AT2G36910 39.764 7.24e-94 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00647 K05658 - gmx:100800293 671.774