Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00643 ATGTCAAATTCTTGTTCTTCCTCAAACATCATTAATCCCTCCAAAAAAAtccttcttgttcttctttcaCTACTCTTCACTCTTTCTTCCTTCCCAACAAAAACAAACTCACTTTTCTTCAACATAACAAATTTCGACGACCCAACCGTCGCTAAAAACATTTCATTCCAAGGTGATGGAAGAATCGCCAACGGTTCCATTGATCTTAACAAAGTAAGTTACTATTTCCGTGTTGGAAGAGCAATATATTCACAACCATTACATTTATgggacaaaaacacaaaaactcTCACAAGTTTCACTACACGTTTCACTTTCACAATCAATAGTTTAAACGGCACTTCTTATGGTGAcggttttgtgttttttttagctCCTGTAGGATATCAAATTCCACCTAATTCAGCTGGTGGTGTTTTTGGTCTTTTTAATGCTACTACAAATAGTGATTATGTTATGAACtatgttgttgctgttgaaTTTGATACTTTTGTTGGTTCTATTGATCCACCAATGAAACATGTTGGGATTGATGATAATGCTTTGACTTCTGTTGCTTATGGGAAATTTGATATTGATAATAATCTTGGTagagtttgttatgttttgATTGATTATAGTTCTGATAAGAAGATGTTGGAAgttttttggtcttttaaagGTGATGGAAATTTTGGgaataattcaatttcttatCAGATTGATCTTATGAAGAAAATGCCTGAATATGTTAATATTGGTTTTTCGGCTTCAACGGGTCTTTTGGCCGAAAGTAATGTTATTCATTCGTGGGAGTTTAGTTCGAATTTGAAATCGGATTCTACCGCGGATGTGTTGGTTGAGGGAAATGGAAAAAAAGGGTCATCGAAAACGGTTGTGGTTATTGTTGCGGTGATTGTTCCggttattttggtaattttgatAGCGAGTGTTGTTGGTTGGGTGATAGTGAAGAGGAAAAGGAAGAGTTTAGATGAAGGGTTGGATGAATATGGGTTACCTGTTTCGCCGAAATTTGATTTGGATAAAGCAACAATACCGAGAAGATTTGAATATAGCGAATTAGTTGCGGCTACTAATGGTTTTGCTGATGATAGAATGCTTGGAAGAGGAGGGTATGGACAAGTTTACAAAGGTGCTTTGAGTTATTTAGGTAAGGTTGTTGCTGTGAAGAGGATTTTTGCCGATTTCGAGAATTCAGAAAGAGTTTTCATCAATGAGGTTAAGATTATAAGCCGTTTAATACATAGAAACTTGGTTCAATTTATAGGTTGGTGTCATGAACAAGGTGAGTTTCTTTTAGTTTTTGAGTACATGCCTAATGGAAGCCTTGACACACATTTGTTTGGTGACAAGAAAACTTTGGCTTGGGAAGTAAGATACAAAATTGCATTAGGTGTCACGAATGCGCTTCGTTATCTTCACGATGACGCCGAGCAATTAGTTCTTCATAGAGATATTAAATCAGCTAATGTGTTGTTGGACACTGATTTCAGCACAAAACTCGGCGATTTCGGCACGGCAAAACTTGTTGATCCAATGTTGAGGACACAGAGAACAGGCGTGGTCGGAACATATGGTTATCTAGCACCTGAATACATCAATGGAGGAAGGGCTAGTAAAGAATCTGATATGTATAGTTTTGGAATTGTCGCTTTGGAGCTAGCAACTGGTAGAAGGATTTTTCAAGATGGTGAGTTTCATGTGCCTTTGATGAATTGGGTTTGGGGACTTTATGTTGAAGGGAATCTTATGAGTGCTGCTGATGAAAGATTGAATTTGGAATTTGATGTTAATGAAATGAAGAGTTTGCTTATTGTAGGGTTATGGTGTACTCATTCAAATGATAAAGAAAGACCTAAAGCTTATGAAGTGATTAAGGTTCTTAATCATGAAATGGTATTACCTGAACTTCCACTTGATATGCATGATCATGCTCCTCCAATTGTAAGTTTTAGGCCATCCAATTATGTATCTTTGCAACCACAAATGACTAATAGTCTTGTTTCTGATGGAAGATAG 2022 0.3417 MSNSCSSSNIINPSKKILLVLLSLLFTLSSFPTKTNSLFFNITNFDDPTVAKNISFQGDGRIANGSIDLNKVSYYFRVGRAIYSQPLHLWDKNTKTLTSFTTRFTFTINSLNGTSYGDGFVFFLAPVGYQIPPNSAGGVFGLFNATTNSDYVMNYVVAVEFDTFVGSIDPPMKHVGIDDNALTSVAYGKFDIDNNLGRVCYVLIDYSSDKKMLEVFWSFKGDGNFGNNSISYQIDLMKKMPEYVNIGFSASTGLLAESNVIHSWEFSSNLKSDSTADVLVEGNGKKGSSKTVVVIVAVIVPVILVILIASVVGWVIVKRKRKSLDEGLDEYGLPVSPKFDLDKATIPRRFEYSELVAATNGFADDRMLGRGGYGQVYKGALSYLGKVVAVKRIFADFENSERVFINEVKIISRLIHRNLVQFIGWCHEQGEFLLVFEYMPNGSLDTHLFGDKKTLAWEVRYKIALGVTNALRYLHDDAEQLVLHRDIKSANVLLDTDFSTKLGDFGTAKLVDPMLRTQRTGVVGTYGYLAPEYINGGRASKESDMYSFGIVALELATGRRIFQDGEFHVPLMNWVWGLYVEGNLMSAADERLNLEFDVNEMKSLLIVGLWCTHSNDKERPKAYEVIKVLNHEMVLPELPLDMHDHAPPIVSFRPSNYVSLQPQMTNSLVSDGR 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00643 673 Pfam Legume lectin domain 39 273 IPR001220 GO:0030246
Tsu01g00643 673 Pfam Protein kinase domain 363 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00643 673 Gene3D Phosphorylase Kinase; domain 1 347 438 - -
Tsu01g00643 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 482 494 IPR008271 GO:0004672|GO:0006468
Tsu01g00643 673 ProSitePatterns Protein kinases ATP-binding region signature. 368 391 IPR017441 GO:0005524
Tsu01g00643 673 Gene3D - 35 280 - -
Tsu01g00643 673 ProSiteProfiles Protein kinase domain profile. 362 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00643 673 CDD lectin_legume_LecRK_Arcelin_ConA 40 270 IPR001220 GO:0030246
Tsu01g00643 673 PANTHER - 33 645 - -
Tsu01g00643 673 Gene3D Transferase(Phosphotransferase) domain 1 439 645 - -
Tsu01g00643 673 ProSitePatterns Legume lectins beta-chain signature. 157 163 IPR019825 -
Tsu01g00643 673 SUPERFAMILY Protein kinase-like (PK-like) 346 653 IPR011009 -
Tsu01g00643 673 PANTHER PUTATIVE-RELATED 33 645 - -
Tsu01g00643 673 SUPERFAMILY Concanavalin A-like lectins/glucanases 37 274 IPR013320 -
Tsu01g00643 673 SMART serkin_6 362 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00643 Tsu-Chr1 5616779 5618866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00643 37 642 Receptor kinase-like Gene Family AT5G10530 45.705 6.80e-174 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu01g00643 Pkinase 1.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00643 - - vun:114193012 862.062