Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00633 ATGGGAACAAGTCTCAGCATTCCGAAAACTGAAAAGTTTTCTGAAGATGGTGAAAATGACCAGCTTAGATATGGATTATCATCTATGCAAGGATGGCGTGCAACAATGGAAGATGCACATGCGGCGCTTCTTGATGTGGACTCATCCACTTCGTTTTTTGGCGTTTATGATGGACATGGAGGTAAGGCGGTTGCAAAGTTTTGTGCCAAGTATCTTCACCAACAGGTGCTCAAGAGTGAAGAATATATAGCTggagatgttggaacatctctTCAGAAAGCATTTTTTAGAATGGACGAGATGATGCGTGGTCAAAGGGGATGGAGGGAACTAGCAGTCTTAGGTGATAAGATAAAAGGGTTCAATGGAATGATTGAAGGATTGATTCGGTCTCCAAGAAGCAGTGGCGATAATAAGGAGCAAAGTGATGATTGGGCCTTTGAGAAGGGGCCTCATTCTGATTTTGATGGACCAACTTCAGGAAGTACTGCCTGTGTCGCAATCATTCGAAACAACCTACTTTTTGTTGCAAATGCTGGTGATTCTCGCTGCGTAATATCTAGGAACGGTCAGGCATACAATTTATCTAGAGACCACAAACCTGAACTTGCGATTGAGAAGGAAAGAATATATAAAGCTGGTGGTTTTATTCATGCAGGACGAGTTAACGGGAGTTTAAATCTTGCAAGAGCTATAGGTGACGTGGATTTTAAGAATAATAGATTTCTTTCTGCTGAAAAACAAGTTGTGACCGCCAATCCAGATATAAACACTGTTGACCTTCGTGACGAAGACGAATTTATGGTGATAGCTTGTGATGGCATATGGGATTGTCTGTCAAGCCAACAATTGGTAGATTTTGTACGTCAAGAACTTCTCTTGAAAACCAAACTTTCTGAGGTTTGTGAAAGAGTGCTAGACCGGTGTTTGGCACCATCTTTAGCTGTTGGTGACGGATGCGATAACATGACAATGATCTTAGTGCAGTTCAAAAAACCAGTGCAGACTATTGCACCAGCTCAAGAACAATCACCTTCAAATGAACAAGGTGCATCTGAACCAAATTTGGAGGGCAATTGA 1080 0.4102 MGTSLSIPKTEKFSEDGENDQLRYGLSSMQGWRATMEDAHAALLDVDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKSEEYIAGDVGTSLQKAFFRMDEMMRGQRGWRELAVLGDKIKGFNGMIEGLIRSPRSSGDNKEQSDDWAFEKGPHSDFDGPTSGSTACVAIIRNNLLFVANAGDSRCVISRNGQAYNLSRDHKPELAIEKERIYKAGGFIHAGRVNGSLNLARAIGDVDFKNNRFLSAEKQVVTANPDINTVDLRDEDEFMVIACDGIWDCLSSQQLVDFVRQELLLKTKLSEVCERVLDRCLAPSLAVGDGCDNMTMILVQFKKPVQTIAPAQEQSPSNEQGASEPNLEGN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00633 359 PANTHER PROTEIN PHOSPHATASE 2C 1 342 IPR015655 GO:0004722|GO:0006470
Tsu01g00633 359 MobiDBLite consensus disorder prediction 337 359 - -
Tsu01g00633 359 CDD PP2Cc 23 330 IPR001932 -
Tsu01g00633 359 MobiDBLite consensus disorder prediction 136 151 - -
Tsu01g00633 359 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Tsu01g00633 359 MobiDBLite consensus disorder prediction 129 158 - -
Tsu01g00633 359 Gene3D - 1 331 IPR036457 -
Tsu01g00633 359 SUPERFAMILY PP2C-like 4 331 IPR036457 -
Tsu01g00633 359 SMART PP2C_4 13 328 IPR001932 -
Tsu01g00633 359 ProSiteProfiles PPM-type phosphatase domain profile. 23 330 IPR001932 -
Tsu01g00633 359 Pfam Protein phosphatase 2C 142 312 IPR001932 -
Tsu01g00633 359 Pfam Protein phosphatase 2C 23 103 IPR001932 -
Tsu01g00633 359 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00633 Tsu-Chr1 5570808 5573866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00633 1 333 PP2C-type Phosphatase Gene Family AT2G25070 75.075 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00633 K17499 - vvi:100261065 576.63