Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00628 atggCAGGGAGGCACTGTTACAAGGATGTGATTCCATTCACAGTAATGGTTGCAATGGAGTGCTCTAACGTTGGTGTCAGTGTTCTATTCAAAGCAGCTACTCAAAAGGGATTGAGTTACTATGTCTTCGTCGCATATTCATATGTTATCTCTACTCTTGTTCTCCTTTTGCCTCtccccttcttcttcttcaaatgGTCAAGAGGGCTTCCTCCTTTGAATGTGTCTCTAATCTTCAGAATTTTTCTCCTTGGAGTTTTGGGAGTTGTAGCTCAACTTTTTGGATATAAAGGACTTCAATACACTACACCTACTCTTTCTTCTGCTCTTTCCAACCTTATACCTGCTTTTACATTCATCCTAGCTGTCTTTTTCAGGATGGAGAAGGTAAACATAAGATCCAAAAGCACTCAAGCAAAAATATTGGGTTCTACAGTATCAATATTAGGTGCACTCATAGTTGTTCTTTATAAGGGTCCAACAATCATACCCACATCATCAATACAACCATCACCACCTATTATTAATTCTACAATAAGCTCAACATCAGAATCAAATTGGGTCCTTGGTGGATCTCTAATTGTTATTCAAGCTATTATTGTTCCAATTTGGTACATTATTCAGACTAATGTTATAAAAGAATATCCATCAGAGGTTATTGTGGTATTTTTATACAACCTATGTGGAACACTAGTGTCTGTTCCAGTATGCTTACTACTTGAATCAAATTTGAGTGCTTGGAAGATAAATCATGATATAACATTGTTCTCCATTGTATACTCGGGAATTTTTTGCACAGGACTAAGTGCTCTTGTTCACACTTGGGGACTCCATGTTAAAGGACCAGTATATATATCACTCTTTAAGCCGTTGTCAATAGCTATTGCGGCATCTTTTAGCGCTATATTCCTCGGCGATGCCCTGTATTTTGGAACTGTAGTTGGAGCAGTAATAATTTCAATTGGATTTTATTCTGTTTTATGGGGGAAATCCAAAGAAGAATCAAATGAAGATTTTGACATAGGTAGAGTTTCACTTCCATCCAATACTAAGACTCCTTTGTTGAAAGGCTCAAATGTGATAGATAAAGGAATCACACATAATGATTCTTGA 1113 0.3603 MAGRHCYKDVIPFTVMVAMECSNVGVSVLFKAATQKGLSYYVFVAYSYVISTLVLLLPLPFFFFKWSRGLPPLNVSLIFRIFLLGVLGVVAQLFGYKGLQYTTPTLSSALSNLIPAFTFILAVFFRMEKVNIRSKSTQAKILGSTVSILGALIVVLYKGPTIIPTSSIQPSPPIINSTISSTSESNWVLGGSLIVIQAIIVPIWYIIQTNVIKEYPSEVIVVFLYNLCGTLVSVPVCLLLESNLSAWKINHDITLFSIVYSGIFCTGLSALVHTWGLHVKGPVYISLFKPLSIAIAASFSAIFLGDALYFGTVVGAVIISIGFYSVLWGKSKEESNEDFDIGRVSLPSNTKTPLLKGSNVIDKGITHNDS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00628 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 226 332 - -
Tsu01g00628 370 PANTHER WAT1-RELATED PROTEIN 10 335 IPR030184 GO:0016021|GO:0022857
Tsu01g00628 370 Pfam EamA-like transporter family 190 327 IPR000620 GO:0016020|GO:0016021
Tsu01g00628 370 Pfam EamA-like transporter family 26 155 IPR000620 GO:0016020|GO:0016021
Tsu01g00628 370 PANTHER WAT1-RELATED PROTEIN 10 335 - -
Tsu01g00628 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 55 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00628 Tsu-Chr1 5537359 5541034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00628 1 364 Nodulin-like Gene Family AT5G40240 52.603 2.12e-132 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00628 - - mtr:MTR_1g014510 565.074