Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu01g00621 | ATGGCATTGTTCCGTAAGTTGTTCAATAAGAAACCCCCTGATGGCCTTATTGAAATCACTGAAAGGGTTTATGTCTTTGATTATTGCTTTACTACGGATGATATGGACAAAGACAAATATAAAGTGTACATAGGAGGAATAATTAGGCAAATTGGCGAGCACTTCCCCGGCGCTTCATCTATGGTGTTCAACATGGGGGAAGGAGAAAACGGAAGCCATATAGCAAGCATTTTGTGTGACTATGACATGACTGTGATGGAGTATCCTAGACAATATGAAGGTTGTCCATTACTTTCCATGGAGATGATCCATCATTTCTTGAGATCAGGTGAAAATTGGCTTCAACTCGGGCAGAAAAATATCGTTTTAATGCATTGCGAACGAGGTGGATGGCCGGTTTTAGCATTTATGCTGGCTGCACTCTTGATTTATAGAAAAATGCATACAGGGGAACATAAAACACTGGATATGATATATAAGCAAGCGCCTCGGGAACTTTTGCAATCGATGTCACCATTGAATCCGTTACCTTCACAAACAAGGTATCTTCAGTACATATCAAGAAGAAATGTTGGTTCAGAATGGCCTCCTCTTGATAGGGCACTTACGTTAGACTGTGTAATTATACGACAAATTCCTAATATGGATAAAGAGGGTGGTTGCCGTCCTATATTTAGGATACATGGACAAGACCCTTTTATTCCTGCCAATCGAACTCCCAAAGTTCTCTTTTCTACTCCGAAAAAGAGCAAACTTGTTCAGCACTACAAGCAGACTGATTGCGATATAGTCAAGATTGACATCCATTGTCATGTTCAAGGCGATGTTGTACTTGAGTGTATTAGTTTGGAAGGTGATTTGGAAAGTGAACAAATGATGTTCCGGCTGATGTTTAATACGGCATTCATAAGatcaaatattttgatgcttaaCCGCGATGAAATCGACATGTCGTGGACTGCTAGAGATCATTTCCCTAAAAATTTTAGAGTAGAgGTTCTTTTCTCAGATATGGAGGCTTcttcgttttctgttttttcaaTCGATCTTCCTCGTATTGAGGAGAAAGAAGTTCTACCTGTTGAAGCATTTGCTAAAGTTAAGGAAATTGTCAGCCAGGTTGAGTGGCTCGATTCGAAGTCCGGTTTAGCAAATTTGATACAACGGATCACAGCATCAAATATCCTTCTAGAAAGATACCATGGTGGAGCTCCGGGTTCACCAAGCGCCTTGCTAGCAGAGTCATTGTCCGGAAGatttaaatttgattcaaagaCACAAAACGAAACAAACAATCGATTGCGATTGTCCGAGGATGTTTCTAAGAATAATATGATTGAATCATTAAAAACAGAGGAATTGTCAGAAGAGAAAACCGAGACTCTTGCAAGTTTAGGTCAAGCGAGCAAACCTATTCCTTCATTTGATCCGTCAAAAGATTCAGATTCTACTAAAGTTGAGACTGAATCATCAGAATCAAAACATTCATCGGAAAATGATTCTGAATTTCCAGCTTCTACAGCTCAGGTGGAACAATCTGTCCCCTTAATTGAACCATCAATAGATGCAGATTCGATGGAAAAGAACACTGGATCATTGGAATCTGAAGAAAAGATGATTGAATCATTAGCAtcaaaagaagaagagattgaATCAGTATCATCTGACTCTTCTACTAATGCAAATTCTGTGAAAAGTATTGAACGGTTAGAatcaaaagaagaagagaatgaaTCATTACCATCAAAGGCGGTATTGGAAAATGACACCATGCTTCCTGCATCCGACTCTTCTACTAATGCAAATTCTGCGAAAAGTATTGGACTGTCAGGATCAAAAGAAAAGGAGACTGAATCATTAGACTCAAAGGTACAGATGGATAATAATAGTGTAGTTAAATCCAAACCAAAGATGCGTCCAGAAGCTGATATAAGAAATCCGAATTCTGCAGGCGAGGAGAATTTTTCAGTGTCCTCATTAATTGTTTGCCGTGGTATAATGACATTGATTAATTGTCAATGTTGTTTGTGTCGTGTGTCATCGTAA | 2046 | 0.3749 | MALFRKLFNKKPPDGLIEITERVYVFDYCFTTDDMDKDKYKVYIGGIIRQIGEHFPGASSMVFNMGEGENGSHIASILCDYDMTVMEYPRQYEGCPLLSMEMIHHFLRSGENWLQLGQKNIVLMHCERGGWPVLAFMLAALLIYRKMHTGEHKTLDMIYKQAPRELLQSMSPLNPLPSQTRYLQYISRRNVGSEWPPLDRALTLDCVIIRQIPNMDKEGGCRPIFRIHGQDPFIPANRTPKVLFSTPKKSKLVQHYKQTDCDIVKIDIHCHVQGDVVLECISLEGDLESEQMMFRLMFNTAFIRSNILMLNRDEIDMSWTARDHFPKNFRVEVLFSDMEASSFSVFSIDLPRIEEKEVLPVEAFAKVKEIVSQVEWLDSKSGLANLIQRITASNILLERYHGGAPGSPSALLAESLSGRFKFDSKTQNETNNRLRLSEDVSKNNMIESLKTEELSEEKTETLASLGQASKPIPSFDPSKDSDSTKVETESSESKHSSENDSEFPASTAQVEQSVPLIEPSIDADSMEKNTGSLESEEKMIESLASKEEEIESVSSDSSTNANSVKSIERLESKEEENESLPSKAVLENDTMLPASDSSTNANSAKSIGLSGSKEKETESLDSKVQMDNNSVVKSKPKMRPEADIRNPNSAGEENFSVSSLIVCRGIMTLINCQCCLCRVSS | 681 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu01g00621 | 681 | ProSiteProfiles | C2 tensin-type domain profile. | 199 | 338 | IPR014020 | - | |
| Tsu01g00621 | 681 | Coils | Coil | 533 | 553 | - | - | |
| Tsu01g00621 | 681 | Gene3D | - | 196 | 341 | - | - | |
| Tsu01g00621 | 681 | PANTHER | FORMIN-J | 1 | 401 | - | - | |
| Tsu01g00621 | 681 | PANTHER | - | 1 | 401 | - | - | |
| Tsu01g00621 | 681 | MobiDBLite | consensus disorder prediction | 567 | 582 | - | - | |
| Tsu01g00621 | 681 | Gene3D | Protein tyrosine phosphatase superfamily | 10 | 191 | IPR029021 | - | |
| Tsu01g00621 | 681 | SMART | PTEN_C2_2 | 197 | 337 | IPR014020 | - | |
| Tsu01g00621 | 681 | MobiDBLite | consensus disorder prediction | 529 | 553 | - | - | |
| Tsu01g00621 | 681 | Pfam | C2 domain of PTEN tumour-suppressor protein | 200 | 336 | IPR014020 | - | |
| Tsu01g00621 | 681 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 13 | 187 | IPR029021 | - | |
| Tsu01g00621 | 681 | MobiDBLite | consensus disorder prediction | 500 | 514 | - | - | |
| Tsu01g00621 | 681 | MobiDBLite | consensus disorder prediction | 480 | 499 | - | - | |
| Tsu01g00621 | 681 | MobiDBLite | consensus disorder prediction | 452 | 651 | - | - | |
| Tsu01g00621 | 681 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 201 | 338 | IPR035892 | - | |
| Tsu01g00621 | 681 | MobiDBLite | consensus disorder prediction | 591 | 610 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu01g00621 | Tsu-Chr1 | 5482708 | 5485752 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu01g00621 | 1 | 408 | FH2 protein (formin) Gene Family | AT2G25050 | 65.281 | 0.0 | 597 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu01g00621 | - | - | cam:101501499 | 910.212 |