Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00620 ATGGCATTGTTCCGTAAGTTTTTCTATAAGAAACCCCCTGATGGCCTTCTTGAAATCACTGAAAGGGTTTATGTCTTTGATTACTGCTTTACCACGGATATTATGGACGAAGACGAATATAAAGTGTATATAGGAGGAATAATTAGGCAAATTGGCGAGCACTTCCCCGACGCTTCATTTATGGTGTTCAACATGAGGGAAGGAGAAAACCAAAGCCATATATCAAGCATTTTGTGTGACTATGACATGACTGTGATGGACTATCCAAGACAATATGAAGGTTGTCCATTACTTACCATGGAGATGATCCATCATTTCTTGAGATCAGGTGAAAATTGGCTTCAACTCGGGCAACAAAATGTCGTCTTGATGCATTGCGAACGAGGTGGGTGGCCGGTTTTAGCATTTATGCTGGCTGCACTCTTGATTTATAGAAAAATGTATACAGGGGAACAAAAAACACTGGATATGATATATAAGCAAGCGCCTCGGGAACTTTTGCAATTGATGTCACCGTTGAATCCATTACCTTCACAATTAAGGTATCTTCAGTACATATCAAGAAGAAATGTTGGTTCAGAATGGCCTCCTTTGGATAGGGCACTTACGCTGGACTGCGTAATTATACGACAAATTCCTAATATGGATGGAGAGGGTGGTTGCCGTCCTATATTTAGGATATATGGACAAGACCCTTTTATTCCTGCGAATCGGACTCCCAAAGTTCTTTTTTCTACTCCGAAAAAGAGCAAACTTGTTCGGCAATACAAGCAGACTGATTGTGAACTAGTCAAGATTGACATCCATTGTCATGTTCAAGGCGATGTTGTACTTGAGTGTATTAGTTTGGAAGGTGATTTGGAAAGTGAACAAATGATGTTCCGGCTGATGTTTAATACGGCATTCATAAGatcaaatattttgatgcttaaCCGCGATGAAATCGACATGTTGTGGAATGCTAGAGATCACTTCCCTAAAAATTTTAGAGTAGAgGTTCTTTTCTCAGATATGGAGGCTTCTTCGTCTTCTGTTATTTCAATCGATCTTCCTCGTATTGAGGAGAAAGAAGGTCTACCTGTTGAAGCATTTGCTAAAGTTAAGGAAATTTTCAGTCAGGTTGAGTGGCTCGATTCGAAGTCCGATGTAGCAAATATGCTACAACAGATCACAGCCTCAAATCTTCTAGAAAGATTGGACGGTGGAGGTCCGGGTTCACCAAGTGCCTTGCTAGCCGAGTCATTGTCCGGAAGATTGAGATTTGATTCAAAGACACAAAACGAAATAAACAATTTCAAATCTTCCTTTTATGATGATCTTCCCATGTCTCCATTGAGATTGCCGGAGGATGTTTCTATGGATAAAATCATTGAATCATTAAAATTAGAGGAATTGTCAGAAGAGAAAATCGAGACTCTTGCAAGTTTAGGTCAAGCAAGCAAACTTATTCCTTCATTTGATCTGTCAAAAGATTCAGATTCTACTAAAGTTGAGATTGAATCACCAGAATCAAAACAATCATTGGAAAATTATCCTAAATTTCCTGCTTCTACAGCTCAGGTAGAACAATCCGTCCCCTTAATTGAACCATCAATAGATGCAGATTCGATGAAAAAGAAGACCGGATCATTGGAAtctgaagaaaagattgaaTCATTAGCATCAAAGGCAGTATTGGAAAATGCAAATTCTGTGAAAAGTATTGGACTGTCAGGATCAAAAGAAAAGGAGACTGAATCATTAGACTCAAAGGCGCTGACGGAAAATGATAGTGTAGTTAAATCCAAACCAGAGATGCGTTCAGAAGCTGATATAAGAAGTCCGAATTCTGCAGGTCAAGAGAAATTTTCAGTGTCCTCATTTGAATCCATTGGGGATGCTACAATGGAAAAGAAGGAAAAACCTTTAGATTTAACGACATCACCAGAAAATAACATCAAGACTCCTGCACCAGCAGATTCAAATCGTACTGCGATGAAGATTGAATCATTAGAATCAAAGGCACCAGTGGAAAATGCTACCAAGTTTCCTATGTCTACGGCTCAAGCAAAAGAATCTACTCCCTCAATCAAACCATCCACGGAAGCAAATTCAGTGAAACAGTCGATGGAGCAATTAGAGtcaaagaaaaatgatattgaATCATTAGAATCAAAGTCATCATTGGGAAATGATACCAAGGGGGAACAATCAGTGCCCTTAATTCAAACATCAGCTGATGAAAGctcaatgaaaaaaatgaaggagAAATCAGAGTCAACGGCGTTGTCAGAAAATGATATCAAGAGTCCCACATCCAAGGTTGATGAGAAACAAACTAGTCCTTTACTTGAATCCACCGTTGatgaaaaatcaattaaaaagaaGATTGATCCTCAAGAATTGCAGGTTTCTCTTCAGCTACCAACCCAATCGAAAATAATTTCGCCAAGGATACATCAAGCTAATCGATCTTCTACAGGTTCTTATTCTCCTAATTCCTCGCTAGGTTCACCTGTAGCATCGGCTCTCGGAATAACATCTGTGTTGCAAGATCATGCACCAATGGATATCAAAGAAGACGTCACTCATGCAGTGTCGATATCTCCTCCTTCAGACTCAAATGTGCCAAAGTCTGTAGAGACTTGTTCTACAAGTATTCCTACGACATCATCAACACCAGCATTGCTTCCATCTTCGCAGTTAAAGTCTTCAGTGGATCCTCCTGGTGCTGTCGAAAAGACTTTAAAACCCCTTGTTTCTATTCCTCCTCCATCTCCACCTCCTCAACAAGATCCTACTTCAAAATCGATGCAATCTACTATTACTATCACACAACACGGTGAAAATTCAATGCATGATAGAAATCAGATATCATCGGCTATTCCTCCTCCTCCCCCTCCTCCATCGCTTCCTGAAACATCTCTTTCCACCATCAAAGATTCATCGAAAAGTCCTCCTTGTCCGccacctccaccaccaccaccaccaccatcttCATCCGAACAtacttcatcatcttcaatacCTCCTCCTCCACTTCCTCCTCCACGGAGTATGAACAACTCTGTTGATATGCCTGGTCCTCCTCCTCCACCTCCACCACCAAGCCAACCTGGAACCACTCCTGGTTCCACTTCTACACAGTTCGTGCCGCCACCACCCCCTCCTCCAGCTTCTGCAACCCAAAATTCTCTGTCTAAAAGCTCTCCAAATGTTCCACCTGTACCTCCACCTCCTTCTGCCAATGGCACTGCAATTCCTGGACCACCTCAGCCTCCTGCAATTCCTGGACCGCCTGGAAATGCACCTCCGGTTCCTGGACCTCCTGGAAATGTGCCTCCAATTCCTGGACCACCTGGCGGTGGATTAAAGGGACGCGGATTGCTACGAACTACTGCAAAAACTCAGACTAAAAGGAGCAATCTAAAACCTTACCATTGGTTAAAGTTAACAAGGGCCATGCAAGGTAGCTTGTGGGCTGAGACACAGAAACTTGATGAAGCTAGTAGGGCTCCTGAGTTTGACATGTCTGAACTTGAGACTCTTTTCTCTGCAGCTACTCCAAATACTAATAATGAAAGAGGGAGTGCAAATCGCCGTGGCTCAGCGCAAAAACCTGACAAAGTTCAATtaATTGAACTCAGACGAGCGTATAACTGTGAGATTATGCTTACAAAAGTCAAAATCCCATTGCCTGATTTAATGGGCCATGTTCTCGCATTGGACGATTCCGTGTTATATGTTGATCAGGTGGAGAACCTCATAAAGTTCTGTCCAACTAAAGAAGAGATGGACCAGCTTAAGGCATACACTGGAGATAAGGACAATTTGGGGAAGTGTGAACAGTTCTTCTTAGAATTAATGAAAGTTCCAAGAGTGGAAAGCAAGCTACGCGTTTTCTGTTTTAAGATGCAATTCTGCTCCCAGGTTCTAGAGCTCAAAAGAGACTTGAATATCGTAAATTCTGCATCTGAAGAGATACGGAATTCAGTCAAATTGAAAAGAATCATGCAGACCATTCTTTCGTTAGGCAATGCTTTGAACCACGGAACTGCAAGAGGTGCTGCTGTTGGGTTCCGATTGGATAGTCTTCTTAAACTTACTGATACACGAGCCCGAAACAACAAAATGACCCTCATGCATTATCTTTGTAAGGTGCTTTCTGAAAAGCTTCCAGAACTTTTAGATTTCCACAAAGACCTAGTTAATTTGGAGGGTTCAAGCAAGATACAATTGAAATATTTGGCAGAAGAAATGCAAGCTATTAGTAAAGGACTGGAGAAAGTAATTCAAGAACTGACTGCATCAGAGAATGATGGACCTGTGTCAGAAACCTTCTGCCAGATTCTGAAAGAATTTCTTAGTGATGGTGAAGCTGAAGTGAGGTCTTTGGCTCAGCTTTATGCCAATGTGGGTAGAAATGCAGATGCATTAGCGTCATACTTCGGAGAAGACCCGGCACGTTGCCCATTTGAACAAGTTGTAACTACTCTGCTGAACTTTGTGAGGATGTTCATCCGAGCACATGACGAAAATTGCAAGCAGATTGAATATGATAAAAAGAAAGCCGAGAAGGAAGCAGCAGCAGAAAATGAAAAGTTGAAGCATGCTGCTAAAAATGACTCCTCTCCGCGTATGATGAGAACCACCATCAAGAGTGGCGATAGCCAATAA 4656 0.4044 MALFRKFFYKKPPDGLLEITERVYVFDYCFTTDIMDEDEYKVYIGGIIRQIGEHFPDASFMVFNMREGENQSHISSILCDYDMTVMDYPRQYEGCPLLTMEMIHHFLRSGENWLQLGQQNVVLMHCERGGWPVLAFMLAALLIYRKMYTGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYISRRNVGSEWPPLDRALTLDCVIIRQIPNMDGEGGCRPIFRIYGQDPFIPANRTPKVLFSTPKKSKLVRQYKQTDCELVKIDIHCHVQGDVVLECISLEGDLESEQMMFRLMFNTAFIRSNILMLNRDEIDMLWNARDHFPKNFRVEVLFSDMEASSSSVISIDLPRIEEKEGLPVEAFAKVKEIFSQVEWLDSKSDVANMLQQITASNLLERLDGGGPGSPSALLAESLSGRLRFDSKTQNEINNFKSSFYDDLPMSPLRLPEDVSMDKIIESLKLEELSEEKIETLASLGQASKLIPSFDLSKDSDSTKVEIESPESKQSLENYPKFPASTAQVEQSVPLIEPSIDADSMKKKTGSLESEEKIESLASKAVLENANSVKSIGLSGSKEKETESLDSKALTENDSVVKSKPEMRSEADIRSPNSAGQEKFSVSSFESIGDATMEKKEKPLDLTTSPENNIKTPAPADSNRTAMKIESLESKAPVENATKFPMSTAQAKESTPSIKPSTEANSVKQSMEQLESKKNDIESLESKSSLGNDTKGEQSVPLIQTSADESSMKKMKEKSESTALSENDIKSPTSKVDEKQTSPLLESTVDEKSIKKKIDPQELQVSLQLPTQSKIISPRIHQANRSSTGSYSPNSSLGSPVASALGITSVLQDHAPMDIKEDVTHAVSISPPSDSNVPKSVETCSTSIPTTSSTPALLPSSQLKSSVDPPGAVEKTLKPLVSIPPPSPPPQQDPTSKSMQSTITITQHGENSMHDRNQISSAIPPPPPPPSLPETSLSTIKDSSKSPPCPPPPPPPPPPSSSEHTSSSSIPPPPLPPPRSMNNSVDMPGPPPPPPPPSQPGTTPGSTSTQFVPPPPPPPASATQNSLSKSSPNVPPVPPPPSANGTAIPGPPQPPAIPGPPGNAPPVPGPPGNVPPIPGPPGGGLKGRGLLRTTAKTQTKRSNLKPYHWLKLTRAMQGSLWAETQKLDEASRAPEFDMSELETLFSAATPNTNNERGSANRRGSAQKPDKVQLIELRRAYNCEIMLTKVKIPLPDLMGHVLALDDSVLYVDQVENLIKFCPTKEEMDQLKAYTGDKDNLGKCEQFFLELMKVPRVESKLRVFCFKMQFCSQVLELKRDLNIVNSASEEIRNSVKLKRIMQTILSLGNALNHGTARGAAVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLSEKLPELLDFHKDLVNLEGSSKIQLKYLAEEMQAISKGLEKVIQELTASENDGPVSETFCQILKEFLSDGEAEVRSLAQLYANVGRNADALASYFGEDPARCPFEQVVTTLLNFVRMFIRAHDENCKQIEYDKKKAEKEAAAENEKLKHAAKNDSSPRMMRTTIKSGDSQ 1551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00620 1551 MobiDBLite consensus disorder prediction 800 831 - -
Tsu01g00620 1551 MobiDBLite consensus disorder prediction 1001 1034 - -
Tsu01g00620 1551 MobiDBLite consensus disorder prediction 1179 1193 - -
Tsu01g00620 1551 MobiDBLite consensus disorder prediction 1064 1114 - -
Tsu01g00620 1551 MobiDBLite consensus disorder prediction 860 899 - -
Tsu01g00620 1551 SMART it6_source 951 1549 IPR015425 -
Tsu01g00620 1551 Gene3D - 196 341 - -
Tsu01g00620 1551 ProSiteProfiles C2 tensin-type domain profile. 199 338 IPR014020 -
Tsu01g00620 1551 PANTHER FORMIN-J 1 684 - -
Tsu01g00620 1551 PANTHER FORMIN-J 674 989 - -
Tsu01g00620 1551 PANTHER FORMIN-J 1046 1544 - -
Tsu01g00620 1551 Coils Coil 696 719 - -
Tsu01g00620 1551 MobiDBLite consensus disorder prediction 926 951 - -
Tsu01g00620 1551 MobiDBLite consensus disorder prediction 1521 1551 - -
Tsu01g00620 1551 MobiDBLite consensus disorder prediction 568 785 - -
Tsu01g00620 1551 MobiDBLite consensus disorder prediction 1179 1200 - -
Tsu01g00620 1551 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1200 1526 - -
Tsu01g00620 1551 Coils Coil 1500 1534 - -
Tsu01g00620 1551 MobiDBLite consensus disorder prediction 742 756 - -
Tsu01g00620 1551 MobiDBLite consensus disorder prediction 606 624 - -
Tsu01g00620 1551 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 338 IPR035892 -
Tsu01g00620 1551 MobiDBLite consensus disorder prediction 1537 1551 - -
Tsu01g00620 1551 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1126 1525 IPR015425 -
Tsu01g00620 1551 MobiDBLite consensus disorder prediction 572 603 - -
Tsu01g00620 1551 MobiDBLite consensus disorder prediction 1521 1536 - -
Tsu01g00620 1551 MobiDBLite consensus disorder prediction 717 741 - -
Tsu01g00620 1551 MobiDBLite consensus disorder prediction 854 1133 - -
Tsu01g00620 1551 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Tsu01g00620 1551 SMART PTEN_C2_2 197 337 IPR014020 -
Tsu01g00620 1551 MobiDBLite consensus disorder prediction 757 780 - -
Tsu01g00620 1551 MobiDBLite consensus disorder prediction 977 994 - -
Tsu01g00620 1551 MobiDBLite consensus disorder prediction 504 525 - -
Tsu01g00620 1551 MobiDBLite consensus disorder prediction 673 704 - -
Tsu01g00620 1551 MobiDBLite consensus disorder prediction 492 545 - -
Tsu01g00620 1551 Gene3D Protein tyrosine phosphatase superfamily 12 191 IPR029021 -
Tsu01g00620 1551 Gene3D Formin, FH2 domain 1145 1539 IPR042201 -
Tsu01g00620 1551 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
Tsu01g00620 1551 Pfam Formin Homology 2 Domain 1128 1499 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00620 Tsu-Chr1 5468820 5478869 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00620 1 409 FH2 protein (formin) Gene Family AT2G25050 69.343 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00620 - - gsj:114393863 1717.59