Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00616 atggAGGAGTTGAAGGCAAACATGTTATTTGGCAAGTACGAGGTGGGAAGAATACTAGGTAAAGGAACATTTGCAAAAGTGTACTATGCCAAAGAAATTGCTACGGGTGAAGGTGTAGCAATTAAAGTTATAGACAAAGACAAAGTGAGAAAAGAAGGCATGATGGAACAAATCAAACGTGAAATTTCAGTGATGAGGTTAGTAAAACATCCAAACATCGTCAACCTTAAAGAAGTCATggcaacaaagacaaaaatcTTGTTCGTCATGGAATATGCACGCGGCGGTGAATTATTCGATAAAGTTGCGAAAGGTAAATTTAAAGAAGAACTTGCAAGGAAGTACTTCCAACAACTTATAAGCGCGGTTGATTATTGTCATAGTAGAGGTGTTTCACACCGCGATTTGAAACCGGAGAATTTGTTACTTGATGAAAACGGGGATCTTAAGGTGTCTGATTTCGGACTCTCTGCTTTGCCCGAACAACTTCGTCAGGACGGACTTTTACATACTCAATGTGGAACTCCTGCTTACGTGGCACCCGAGGTAGTTAGAAAAAGAGGTTATAACGGTTTTAAAGCCGATACTTGGTCATGTGGTGTTATTCTTTATGCTTTACTTGCTGGATTTTTACCTTTTCAACATGAAAATTTAATGTCCATGTATACTAAAGTTTTCAAAGAAGATTATCAATTTCCTCCTTGGTTTTCGCCCGAATCAAAGAGATTAATCTCGAAGATTCTAGTAGCTGATCCAGAAAGAAGAATCACTATTTCTTCAATCATGAATGTTCCATGGTTTCGAAAAGGTTTATCGTCACTATCAACATTTACTACTTCAAATGATGATGTAGAATTGGAAGCAAAGGTGATTGATTCTTCTCCACCGCAATTTTTCAATGCGTTCGAGTTTATTTCTTCGATGTCTTCAGGGTTCGATCTTTCAGGTTTGTTTGAGGAAAAGAAAAAACGGGGTTCAATTTTTACTTCAAAGTGTTCCGTTTTAGAAATTGTGACAAAAATCGAAAGTGCTGCgaaaaatttaaagtttaagGTTAAAAAGGTTAAGGATTTCAAACTGAAGTTACAAGGGTCATGTGAAGGGAGAAAAGGAAAGTTAGCGGTGTCGGCGGAGATATACGAGGTGGCGCCGGAGCTTGCAGTGGTTGAATTTTCCAAGTGTTCCGGTGATACTTTTGAATATGTTAAGGTGTTTGAAGAAGATGTTAGGCCTGCTCTCAAAGACATTGTTTGGTCATGGCAAGGGGAATGA 1272 0.3742 MEELKANMLFGKYEVGRILGKGTFAKVYYAKEIATGEGVAIKVIDKDKVRKEGMMEQIKREISVMRLVKHPNIVNLKEVMATKTKILFVMEYARGGELFDKVAKGKFKEELARKYFQQLISAVDYCHSRGVSHRDLKPENLLLDENGDLKVSDFGLSALPEQLRQDGLLHTQCGTPAYVAPEVVRKRGYNGFKADTWSCGVILYALLAGFLPFQHENLMSMYTKVFKEDYQFPPWFSPESKRLISKILVADPERRITISSIMNVPWFRKGLSSLSTFTTSNDDVELEAKVIDSSPPQFFNAFEFISSMSSGFDLSGLFEEKKKRGSIFTSKCSVLEIVTKIESAAKNLKFKVKKVKDFKLKLQGSCEGRKGKLAVSAEIYEVAPELAVVEFSKCSGDTFEYVKVFEEDVRPALKDIVWSWQGE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00616 423 CDD CIPK_C 300 414 - -
Tsu01g00616 423 CDD STKc_SnRK3 12 266 - -
Tsu01g00616 423 PANTHER - 1 423 - -
Tsu01g00616 423 Gene3D Phosphorylase Kinase; domain 1 3 92 - -
Tsu01g00616 423 Gene3D Transferase(Phosphotransferase) domain 1 93 272 - -
Tsu01g00616 423 Pfam Protein kinase domain 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00616 423 Gene3D Kinase associated domain 1, KA1 294 419 - -
Tsu01g00616 423 SUPERFAMILY Protein kinase-like (PK-like) 9 279 IPR011009 -
Tsu01g00616 423 ProSiteProfiles Protein kinase domain profile. 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00616 423 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Tsu01g00616 423 Pfam NAF domain 296 354 IPR004041 GO:0007165
Tsu01g00616 423 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 1 423 - -
Tsu01g00616 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Tsu01g00616 423 SMART serkin_6 13 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g00616 423 ProSiteProfiles NAF domain profile. 294 319 IPR018451 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00616 Tsu-Chr1 5439831 5441773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00616 2 423 CBL-interacting serine-threonine protein kinases AT5G25110 66.895 0.0 616
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Tsu01g00616 Pkinase 2.9e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00616 - - vvi:100259329 632.869