Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00609 ATGATAACTTGGAACCTTTTTCACGCAAGAATAACCTCTACACACGCAATATTGTTAttgtttcttcttcaatttttcgtttttttggtTACACAAGTTGTTTCTGAGAACCTTGTTGAATATTCAACCTGTGATATGGGCTATCTCAATTCTGTTTTGTCATCTTCAAGTCAGGTTCATTCTGCTGATGATTCACCTGTTAGTGGTGGGGGACTCAGTCAGAATGGAAAATTCAGCTATGGATATGCTAGCTCCCCTGGCAAGAGATCTTCGATGGAAGATTTttatgagacaagaattgacgGCGTTGATGGTGAAGTTGTTGGCCTTTTTGGAGTTTTTGATGGTCACGGCGGTGCTCGTGCTGCTGAGTACGTCAAACAAAACCTATTTAGTAATTTGATCAGCCATCCAAAATTCATTTCTGACACCAAATCTGCAATAGCTGATGCGTATACACATACCGACTCCGAATTTCTGAAATcagaaaataatcaaaacagAGATGCTGGATCTACTGCTTCCACTGCCATTCTTGTTGGTGACCGTTTGATTGTGGCAAATGTTGGCGACTCCAGAGCTGTTATATGCCGGGGCGGAAACGCAATTGCTGTGTCCCGAGATCACAAACCAGATCAAACCGATGAGAGGCAAAGGATAGAGGATGCAGGAGGATTTGTTATGTGGGCTGGAACTTGGAGAGTTGGTGGTGTTCTTGCTGTTTCCCGTGCATTTGGTGATAGACTCCTTAAGCAATACGTTGTTGCTGATCCGGAAATCCAGGAAGAAAAGGTTGATAGCTCTCTCGAGTTTCTTATATTGGCCAGTGACGGACTATGGGATGTTGTCTCAAATGAGGAAGCTGTTGCTATGATTAAACCGATTGAGGACGCCGAGGAGGCAGCTAAGAGACTGATGAAAGAAGCATATCAGAGAGGTAGTTCTGACAACATTACTTGTGTTGTCGTTCGTTTCATATTGAACAACCAAGGTTCTTCTTCTCGTAATAGCTCTGGCTAA 1020 0.4069 MITWNLFHARITSTHAILLLFLLQFFVFLVTQVVSENLVEYSTCDMGYLNSVLSSSSQVHSADDSPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVDGEVVGLFGVFDGHGGARAAEYVKQNLFSNLISHPKFISDTKSAIADAYTHTDSEFLKSENNQNRDAGSTASTAILVGDRLIVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVAMIKPIEDAEEAAKRLMKEAYQRGSSDNITCVVVRFILNNQGSSSRNSSG 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00609 339 PANTHER PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C 48 333 - -
Tsu01g00609 339 SUPERFAMILY PP2C-like 73 325 IPR036457 -
Tsu01g00609 339 SMART PP2C_SIG_2 74 325 IPR001932 -
Tsu01g00609 339 ProSiteProfiles PPM-type phosphatase domain profile. 79 325 IPR001932 -
Tsu01g00609 339 SMART PP2C_4 69 323 IPR001932 -
Tsu01g00609 339 PANTHER ALPHABET, ISOFORM E-RELATED 48 333 - -
Tsu01g00609 339 Pfam Protein phosphatase 2C 107 318 IPR001932 -
Tsu01g00609 339 Gene3D - 71 329 IPR036457 -
Tsu01g00609 339 ProSitePatterns PPM-type phosphatase domain signature. 110 118 IPR000222 GO:0043169
Tsu01g00609 339 CDD PP2Cc 78 325 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00609 Tsu-Chr1 5344265 5348860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00609 46 336 PP2C-type Phosphatase Gene Family AT4G31750 90.816 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00609 K17506 - gmx:547661 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00609 01 5344265 5348860 Tsu01g00609 01 5344265 5348860 ECH
Tsu01g00609 01 5344265 5348860 Tsu07g00719 07 5884309 5888971 PCT