Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g00608 ATGGCTATTAAGCTTTGCGATTCCTGCAAGTCAGCAAAGGCAACACTATTCTGCCGTTCTGACTCAGCTTTCCTCTGTATCACCTGTGACTCCAACATCCATGCAGCCAACAAACTCGCCTCCCGCCACCACCGTGTCTCACTTTGCGAAGTCTGCGAGCAAGCTCCTGCTCATGTCACCTGCAAAGCTGACGCCGCGGCTCTCTGTGTCTCCTGCGATCATGACATCCACTCCGCTAACCCCCTCGCTCGCCGTCACGAACGCATCCCTTTAACCACCTTCCACCACAACAACGGCGAACAACAATTCTTCTCAGAATCCGATCCCGATGCTGACGTCACCACCGAAGAAGCCGAAGCTGCTTCTTGGCTCCTCCAAACTCCTTCCAATCCTAAATTTCCCGATCTCAATACCTCTCACTACTCATTCACCGATATGGACGCTACCGAGCTCGATTTCATCTCCGTCGGCGCTAAAACAGACTCACCGGAGCAACAAAGTCCCGGCACCGCAGACGGTGTCGTACCGGTGCAGTCTCAGAGCAAAACCGCCACCGAACACTACTCCGATATCAACATCGATTTCTCAAACTCCAAACCTTTCACTTACAGTTACAATCACAACGTATCGTCGCCGTCGATGGAAGTTGGAGTTGTACCGGACGGGAATACGGAGTTATCGTACTGCGATTACCGGAGTACGGCGACGGAGACGGTGGTGTTGACGGCGGCGGATAGAGAAGCTAGAGTTATGAGATacagagagaagagaaagaatcgAAGGTTCGAGAAGACGATTCGTTACGCTTCGAGAAAAGCTTATGCAGAAACTAGACCTAGAATTAAAGGAAGGTTCGCGAAACGCTCTGATTTGAACGTGAATCTAATTGCAGAGGATGAATACGGCGTCGTTCCGTCTTGTTAA 924 0.5 MAIKLCDSCKSAKATLFCRSDSAFLCITCDSNIHAANKLASRHHRVSLCEVCEQAPAHVTCKADAAALCVSCDHDIHSANPLARRHERIPLTTFHHNNGEQQFFSESDPDADVTTEEAEAASWLLQTPSNPKFPDLNTSHYSFTDMDATELDFISVGAKTDSPEQQSPGTADGVVPVQSQSKTATEHYSDINIDFSNSKPFTYSYNHNVSSPSMEVGVVPDGNTELSYCDYRSTATETVVLTAADREARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDLNVNLIAEDEYGVVPSC 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g00608 307 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Tsu01g00608 307 SMART bboxneu5 1 48 IPR000315 GO:0008270
Tsu01g00608 307 SMART bboxneu5 49 91 IPR000315 GO:0008270
Tsu01g00608 307 Pfam B-box zinc finger 5 47 IPR000315 GO:0008270
Tsu01g00608 307 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Tsu01g00608 307 ProSiteProfiles CCT domain profile. 246 288 IPR010402 GO:0005515
Tsu01g00608 307 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 3 306 IPR045281 GO:0009909
Tsu01g00608 307 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Tsu01g00608 307 CDD Bbox1_BBX-like 5 48 - -
Tsu01g00608 307 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 3 306 - -
Tsu01g00608 307 Pfam CCT motif 246 288 IPR010402 GO:0005515
Tsu01g00608 307 MobiDBLite consensus disorder prediction 159 185 - -
Tsu01g00608 307 CDD Bbox1_BBX-like 48 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g00608 Tsu-Chr1 5337504 5339025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g00608 1 292 C2C2-CO-like Transcription Factor Family AT5G24930 54.783 9.97e-99 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Tsu01g00608 zf-B_box 6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g00608 - - cam:101512206 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00608 01 5337504 5339025 Tsu01g00608 01 5337504 5339025 ECH